Danio rerio (zebrafish): 406249
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Entry
406249 CDS
T01004
Symbol
ddx39ab
Name
(RefSeq) DEAD (Asp-Glu-Ala-Asp) box polypeptide 39Ab
KO
K13182
ATP-dependent RNA helicase DDX39 [EC:
5.6.2.7
]
Organism
dre
Danio rerio (zebrafish)
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dre03041
]
406249 (ddx39ab)
Enzymes [BR:
dre01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
406249 (ddx39ab)
Spliceosome [BR:
dre03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
406249 (ddx39ab)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
P-loop_SecA
Motif
Other DBs
NCBI-GeneID:
406249
NCBI-ProteinID:
NP_998142
ZFIN:
ZDB-GENE-040426-2902
Ensembl:
ENSDARG00000015111
UniProt:
Q803W0
LinkDB
All DBs
Position
3:complement(5619056..5644059)
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AA seq
427 aa
AA seq
DB search
MAENDVENELLDYEEDEEPQGAPESAAPVGKKEVKGSYVSIHSSGFRDFLLKPELLRAIV
DCGFEHPSEVQHECIPQAILGMDILCQAKSGMGKTAVFVLATLQQIEPVDGQVSVLVMCH
TRELAFQISKEYERFSKYMPTVKVAVFFGGMSIKKDEDVLKKSCPHIVVGTPGRILALVR
NKTLNLKNVKHFVLDECDKMLEQLDMRRDVQDIFRLTPHEKQCMMFSATLSKEIRPVCRK
FMQDPMEVFVDDETKLTLHGLQQYYCKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCV
ALSQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIVFN
YDMPEDSDTYLHRVARAGRFGTKGLAITFVSDETDAKILNDVQDRFEVNVAELPEEIDIS
TYIEQSR
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atggctgagaatgacgttgagaatgagctgcttgattatgaggaggatgaggagcctcag
ggagccccagaaagcgccgctccagtgggcaagaaggaggtgaagggctcgtacgtctcc
atccacagctccggcttcagagactttctgctcaagccagagctgctgagagccatcgtg
gactgcgggttcgagcatccctctgaagtgcagcacgagtgtatcccgcaggccatcctg
ggcatggatatcctctgtcaggctaagtctggtatggggaagacggctgtgttcgtgctt
gctaccctgcagcaaatcgagccagtggacggacaggtgtcggtgctggtcatgtgtcac
acgcgagagctggcctttcagatcagcaaagagtacgagcgcttctccaagtacatgccc
acggtgaaggtggctgtgtttttcggcggcatgtccatcaagaaggacgaggatgtgctg
aagaagagctgccctcacattgtggtcggcacgccggggcgaatcctcgctctggtgcga
aacaaaacccttaacctgaagaacgtcaaacacttcgtcctggacgagtgcgataagatg
ctggagcagctggacatgaggcgtgatgttcaggacatcttcaggctcactcctcatgag
aagcagtgcatgatgttcagcgccacgctcagcaaggagatccggcccgtctgccgcaag
ttcatgcaggacccgatggaggtgtttgtggatgacgagacgaagctgactcttcacggt
ctgcagcaatactactgcaagctgaaggacaacgagaagaaccgcaagctcttcgacctg
ctcgacgtgctggagttcaaccaggtggtgatcttcgtgaagtctgtccagcgctgtgtg
gcgctctcacagttactggtggagcagaatttcccagccatcgccatccacagaggaatg
gcccaggaggagcggttgtcccggtatcagcagtttaaagactttcagaggaggatcctg
gtggccacaaacctgttcggacgaggaatggacatcgagagagtcaacatcgtcttcaac
tacgacatgccggaggactcggacacgtatctccacagggtggctcgtgcgggtcgtttc
ggcaccaagggtttggccatcacatttgtgtcagacgagacagacgccaagatcctgaac
gacgtgcaggacagatttgaggtcaacgtggccgagttaccggaggagatcgacatttcc
acttacattgaacagtccagatga
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