Danio rerio (zebrafish): 406251
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Entry
406251 CDS
T01004
Symbol
rbm39a
Name
(RefSeq) RNA-binding protein 39a
KO
K13091
RNA-binding protein 23/39
Organism
dre
Danio rerio (zebrafish)
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dre03041
]
406251 (rbm39a)
Spliceosome [BR:
dre03041
]
Common components
Common spliceosomal components
General mRNP proteins
406251 (rbm39a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RBM39linker
PRP38_assoc
RRM_occluded
RRM_5
RSRP
RBD_DEAH11
RRM_7
CDC45
Motif
Other DBs
NCBI-GeneID:
406251
NCBI-ProteinID:
NP_001012304
ZFIN:
ZDB-GENE-040426-2852
Ensembl:
ENSDARG00000011613
UniProt:
Q803H1
LinkDB
All DBs
Position
11:24339346..24345421
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AA seq
523 aa
AA seq
DB search
MADDLDIEAMLEAPYKKDDNKSLSTNGHEERSKKKKRSKSRSRSRDRKRSKSRERKKSHD
RRRSRSRDRKRSRSKERRRSRSRSRERGGRYRAPFSGLKFNGGPRGKTGPPPAIKLSRRR
SRSRSPFKKDRSPVRQPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSAVGKVRDVRI
ISDRNSRRSKGIAYIEFVDSTSVPLAIGLSGQRLLGVPIIVQASQAEKNRAAALANNLQK
GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIDSIQLMMDSETGRSKGYGFITFSDAECA
KKALEQLNGFELAGRPMKVGHVTERTDASTASSFLDNDELERTGIDLGTTGRLQLMARLA
EGTGLQIPPAAQQALQMSGSMVAMAAATAAMNPGLSFNINVPTNQALNLPSQPIATHCFQ
LSNMFNPNSENDHGWEIEIQDDVIEECNKHGGVIHIYVDKKSAEGNVYVKCPTIPAAMAA
VSALHGRWFGGKMITAAYVPLPTYHNLFPESVQATQLLIPSRR
NT seq
1572 nt
NT seq
+upstream
nt +downstream
nt
atggccgatgatttggacattgaagcaatgctcgaggctccatataaaaaggatgacaac
aagtccttaagtaccaatggccacgaggagcggagcaagaaaaaaaagaggagcaaaagt
cgcagccggagtcgggacaggaagagaagcaagagtcgcgagcgcaaaaagagtcatgac
cggaggaggagccgcagcagagaccggaagcgcagccgcagcaaggagagacgtcgcagc
cgttctcggagcagggagcgcggcggtcgctacagagctccattttctggcctgaaattt
aacggtggtcccagggggaagactggcccaccacctgccatcaaactaagtcgaagaagg
tctagaagccgaagtcctttcaagaaagatagaagccctgtaagacagcccattgacaat
ctcacccctgaggaaagagatgctcgcacagtgttctgtatgcagctggcagccagaatc
cggccacgagacctagaagaattcttttctgcagttggaaaagtacgagatgtgcgaatc
atctctgaccgaaactccagaagatccaaaggaattgcttacattgagtttgtggattcc
acatctgtacccctggcaattggtctatctggacaaaggcttcttggagtaccaatcatt
gtccaggcttcacaggctgagaagaacagagccgctgcattggccaataacttgcagaag
ggcagcgcaggacccatgaggctctatgttggctcattgcatttcaacatcacagaagac
atgctccgaggcatttttgaaccatttggaaggattgatagtatccaactgatgatggac
agtgaaacaggacgatctaaaggatatggttttatcacattttctgatgctgaatgtgca
aagaaggcactggaacagcttaatggctttgagttggctggtagaccaatgaaagtggga
catgtgacggagcgcacagatgcctccaccgccagctccttcctggacaacgatgagcta
gaaagaaccggtattgatctggggactacaggaagacttcaactcatggccagattagct
gagggaactggtttgcagatcccgcccgctgcacaacaggcccttcagatgagtggctcc
atggttgccatggctgcagctactgctgctatgaaccctggattgagttttaacatcaat
gtgccaacaaaccaagccttgaatttaccatcacaacccattgcaacacactgtttccag
ctgtccaacatgttcaatccaaactcagaaaatgatcatggttgggaaatcgaaattcag
gatgatgtcattgaagagtgcaacaaacacggtggagtcatacacatatatgtggacaag
aaatctgctgaaggtaatgtctatgtgaagtgtcccaccattcctgctgccatggctgca
gtcagtgcgctacatggacgctggtttggaggtaaaatgatcacagcagcttatgtcccg
cttcctacataccacaacctttttccagagtcagtgcaggccacacagcttctaatcccc
agtcgtcggtga
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