Danio rerio (zebrafish): 406326
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Entry
406326 CDS
T01004
Symbol
cstf3
Name
(RefSeq) cleavage stimulation factor subunit 3
KO
K14408
cleavage stimulation factor subunit 3
Organism
dre
Danio rerio (zebrafish)
Pathway
dre03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
406326 (cstf3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dre03019
]
406326 (cstf3)
Messenger RNA biogenesis [BR:
dre03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
406326 (cstf3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Suf
HAT_PRP39_N
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
TPR_14
NRDE-2
TPR_16
TPR_19
TPR_6
Motif
Other DBs
NCBI-GeneID:
406326
NCBI-ProteinID:
NP_998218
ZFIN:
ZDB-GENE-040426-1997
Ensembl:
ENSDARG00000018904
UniProt:
Q7ZVG5
F1QIB2
LinkDB
All DBs
Position
18:complement(45734290..45761868)
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AA seq
716 aa
AA seq
DB search
MSTETPPDQAAEYIPEKVKKAEKKLEENPYDLDAWSILIREAQNQPIDKARKTYERLVAQ
FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYVRETKGKLPSYKE
KMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPM
INIEQLWRDYSKYEEGINVHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQ
NSPQEAQQVEMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQY
LEQSSKLLAEKGDMNNAKLFSDEAANIYERAIGTLLKKNMLLYFSFADYEESRMKHEKVH
SIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRSIFKKAREDPRTRHHVYVTAALMEY
YCSKDKSVAFKIFELGLKKYGDIPEYILAYIDYLSHLNEDNNTRVLFERVLTSGSLSPEK
SGEIWARFLAFESNIGDLASILKVERRRFMAFKDEYEGKETALLVDRYKFMDLYPCSPSE
LKALGYKDVSRAKYASLIPEAVVAPSTPALKDEADRKPEYPKPDTCQMIPFQPRHLAPPG
LHPVPGGVFPVPPAAVVLMKLLPPPSCFTGPFVQVDEMMEALRRCVLPDTVDAAVELITG
KQLEMSSEGNGPVENHSVANKSLKRPNADSDEEEDKGSIAPPIHDIYRARQQKRIR
NT seq
2151 nt
NT seq
+upstream
nt +downstream
nt
atgtccaccgaaactccaccggaccaggcggcagagtacattccggagaaggttaagaaa
gcagagaagaagttggaagaaaatccatatgacctcgacgcttggagcatactgattcgt
gaagcacagaatcaacccatagacaaagcaaggaagacatatgagcgacttgtcgcccag
tttcccagttcgggcagattctggaagctatacattgaagctgagatcaaggctaaaaac
tatgacaaggttgaaaagttatttcaaaggtgcttgatgaaggtcctgcacattgacctg
tggaagtgctacctctcgtacgtccgggaaaccaaaggaaaacttcccagctataaggaa
aagatggcacaggcttatgattttgccttggataagattgggatggagatcatgtcctat
cagatttgggtggattatataaattttctcaaaggagtagaggctgttggatcatatgct
gaaaatcagcggattactgctgtcagacgtgtgtaccagagaggctgcgtcaaccctatg
atcaacattgagcagctctggagagactacagcaaatatgaagagggtataaatgtgcat
ttggccaaaaagatgattgaagacaggagcagagactacatgaacgccaggagagttgct
aaggagtatgagactgtgatgaagggtttggacaggaatgctccttcagtcccgcctcag
aactccccacaggaggcccagcaggtggagatgtggaagaaatacatccagtgggagaaa
agcaacccgctgcgcactgaagatcagacgctcatcactaagagagtgatgttcgcttat
gagcagtgccttttggtacttgggcatcacccggacatctggtacgaagctgcacagtac
ctggaacagtctagcaaactgctggcagaaaaaggggacatgaacaatgccaagctgttc
agtgacgaagctgcgaatatttacgagcgtgccataggaaccctgctgaaaaagaacatg
ctgctgtatttctcatttgcagattatgaagagagtcgtatgaagcatgagaaggttcat
agtatatacaaccgcctactggcgatagaagatatcgatcctacactggtctatattcag
tatatgaaattcgccagaagagctgaaggcattaagtctggtcgttccatctttaagaag
gccagagaggatcctcgaacacgacaccacgtgtacgtcactgctgctctgatggagtac
tactgcagcaaggacaaatctgtggcctttaagatatttgagctgggactgaagaaatat
ggtgacattcctgagtacattctggcgtacattgattacctctctcatctaaatgaggac
aacaacaccagagtcctgtttgagagagtcctgacgtccggcagtctctcccctgagaaa
tctggggaaatctgggcacgcttcttggcctttgagagcaacatcggggacttggccagt
atcctgaaggtggagcgaagacgtttcatggcctttaaagacgagtatgagggaaaggag
acggctctgctggtggacagatacaagttcatggatttgtatccctgctctccgagtgaa
ctcaaagctctaggatataaggatgtatctcgtgccaaatatgcatctctgatcccggag
gcggtggtcgctccttctacccctgctctgaaagacgaggctgaccgtaaaccagaatat
cccaaacctgacacctgccagatgatccccttccagccgcggcacctggcgccccctggg
ctgcatcctgttcccggaggagtgtttcctgttcctcctgctgctgtcgtcctgatgaag
ctgctgcctcctcccagctgctttaccggcccctttgtgcaggtggatgagatgatggag
gctctcagaagatgtgtattaccagacactgtcgacgctgccgtggagctgatcactggc
aaacagctggagatgagcagtgagggaaacgggccggtggaaaatcactctgtggccaac
aaatccttgaagcggcccaatgcggattcagacgaggaggaggacaaagggtccatcgct
ccaccaatccatgacatctatagagcgcgacagcagaagaggatccgatga
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