Danio rerio (zebrafish): 406376
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Entry
406376 CDS
T01004
Symbol
rtcB
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
dre
Danio rerio (zebrafish)
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
dre03016
]
406376 (rtcB)
Enzymes [BR:
dre01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
406376 (rtcB)
Transfer RNA biogenesis [BR:
dre03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
406376 (rtcB)
Prokaryotic type
tRNA splicing ligases
406376 (rtcB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
406376
NCBI-ProteinID:
NP_998268
ZFIN:
ZDB-GENE-040426-2096
Ensembl:
ENSDARG00000101047
UniProt:
Q6NZS4
Structure
PDB
PDBj
LinkDB
All DBs
Position
4:complement(931704..940406)
Genome browser
AA seq
505 aa
AA seq
DB search
MSRSYNDELQYLDKIHKNCWRIKKGFVPNMLVEGVFYVNDPLEKLMFEELRNACRGGGFG
GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMENPDAVVSPGGVGFDI
NCGVRLLRTNLDEGDVQPVKEQLAQSLFDHIPVGVGSKGVIPMGAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSSKAKKRGLPQLGTLGAGNHYAEIQVVDEIYND
YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDRITVNDRQLACARITS
EEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFSKVFSTTPDDLDMHVIYDVSHNIAKVEE
HMVDGRQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHDAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagtcgctcttacaacgatgagctccagtatctggataaaatacacaaaaactgctgg
cggatcaagaagggtttcgtgccgaatatgctggtggaaggagtgttttatgtcaatgac
ccgctggaaaagctgatgttcgaggagctgagaaacgcctgtcgcggaggagggtttgga
ggtttcttacctgcgatgaagcagattgggaatgtggccgctctgccaggaatcgtgcac
cggtcgatcggtttaccggacgttcactcaggatacggattcgctatcgggaacatggca
gcgttcgacatggagaatccggacgcagtcgtctctccaggcggtgtgggtttcgatatt
aactgtggtgttcgtctgctgcgcacaaacctggatgagggcgacgttcagccggtgaag
gagcagctggcacagtctctcttcgaccacatccctgtcggagtcggctccaagggcgtc
attcctatgggtgcaaaggacctggaggaggcgttggagatgggtgtggactggtctctg
agggagggatacgcctgggcggaggataaagagcactgtgaggagtacggacgcatgctg
caggccgacccaaacaaagtctcctccaaagccaagaagagaggactgccacagttggga
actctgggtgcaggaaaccactacgcagagattcaggtggtggacgagatctacaatgat
tacgccgccaagaagatgggcatcgatcataaagggcaggtgtgtgtgatgatccacagc
ggcagccgaggactcggacatcaggtggccaccgacgccctggtggcaatggagaaggcc
atgaagcgcgaccgcatcacagtgaacgaccggcagctagcgtgcgcgcgcatcacgtca
gaggagggccaggattatctgaagggaatggcggcagcaggaaactacgcctgggtcaac
cgatcctccatgaccttcctcacacgacaggcgttctccaaagtgttcagcaccacacca
gatgatctggacatgcacgtgatctacgacgtctcgcacaacatcgccaaagtggaggag
cacatggtggacggccggcagaaaacactgctggtgcataggaagggctcgaccagagcg
tttcctccacaccatccactcatacctgtagactatcagctgaccggtcagccagtcctg
attggaggaaccatgggcacctgcagttacgtgctcacaggcacagagcagggcatgaca
gagacgttcggcaccacatgtcacggcgctggtcgagctttatccagagccaaatccaga
cgcaacctggacttccaggatgttctggataaactggcagacatgggcatcgctattagg
gtggcgtcaccgaagctggtgatggaggaggctcctgagtcctacaagaacgtgacagac
gtggtgaacacatgccatgatgccggcatcagtaaaaaagccatcaaactcagacccatc
gctgtgattaaaggttaa
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