KEGG   Danio rerio (zebrafish): 406495
Entry
406495            CDS       T01004                                 
Symbol
rbm22
Name
(RefSeq) pre-mRNA-splicing factor RBM22
  KO
K12872  pre-mRNA-splicing factor RBM22/SLT11
Organism
dre  Danio rerio (zebrafish)
Pathway
dre03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:dre00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    406495 (rbm22)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:dre03041]
    406495 (rbm22)
Spliceosome [BR:dre03041]
 Complex B
  Other components
   Prp19-related factors
    406495 (rbm22)
 Complex C
    406495 (rbm22)
SSDB
Motif
Pfam: STL11_N zf-CCCH_RBM22 RRM_1 zf_CCCH_4 Torus Nup35_RRM_2 RRM_occluded zf-CCCH_2 zf-CCCH RRM_3 RRM_YTH1 zf-CCCH_4 zf-CCCH_10 RRM_PARP14_3 Calcipressin zf-CCCH_12 zf-CCCH_PARP12
Other DBs
NCBI-GeneID: 406495
NCBI-ProteinID: NP_998379
ZFIN: ZDB-GENE-040426-2298
Ensembl: ENSDARG00000010238
UniProt: Q6NZZ9
LinkDB
Position
21:complement(35891673..35911528)
AA seq 425 aa
MATSLGSNTYNRQNWEDSDFPILCQTCLGENPYIRMTKEKFGKECKICARPFTVFRWCPG
VRMRFKKTEVCQTCSKMKNVCQTCLLDLEYGLPIQVRDTGLSVKDEVPRSDVNKEYYTQN
MEREIANSDGTRPVGLLGKAPSSSDMLLKLARTTPYYKRNRPHICSFWVKGECKRGEECP
YRHEKPTDPDDPLADQNIKDRYYGINDPVANKLLMRASTMPRLDVPDDKSITTLYIGGLG
ENVTDSELRNHFYQFGEIRTITIVQRQQCAFIQFATRQAAETAAEKSFNKLIINGRRLNV
KWGRSQAARGKGEKDGVTESGIRLEPVPGLPGALPPPPVSDEDASTNYFNLAPTPSPAVM
NLGLPPPPGVTMPPPPGFGPPMFHTMDPMAPPVPPPMALRPPGQVHYPSQDPQRMGAHAS
RHGGP
NT seq 1278 nt   +upstreamnt  +downstreamnt
atggcgacgtctttgggatccaacacttataacaggcaaaactgggaagattcggatttt
cccatcctctgtcaaacatgcttgggagaaaacccttacattcgcatgacgaaagagaaa
tttggcaaggagtgcaagatctgtgcacgtcccttcacagttttccgctggtgtcctgga
gtcaggatgcgctttaagaagacagaagtgtgtcagacctgtagtaaaatgaagaacgtt
tgtcagacctgcctcctagatctggaatatggtttgcccattcaggttcgtgacactggg
ctctccgttaaggatgaagtaccgcgatctgatgtgaataaggagtattacactcagaat
atggaaagagagattgccaactctgatggcacgagacctgtgggtttgcttggaaaggct
ccgagcagcagtgatatgctgctgaaactggcgcgcaccacaccgtactacaagaggaac
agaccacacatctgttccttctgggttaaaggagagtgcaaaagaggagaagagtgtccg
tacaggcatgaaaaacccactgatccagatgaccccctggctgatcagaacattaaggac
cgatactatggaattaatgatcctgtggctaataaactgctgatgcgagcctccaccatg
cccagactggacgtaccggacgacaagtccataaccacactttatattggaggcctggga
gaaaacgtcacagactcggagctccggaatcacttttaccagtttggagagattcggacc
atcactattgtccagaggcagcagtgtgcttttattcagtttgccactcgacaggctgca
gaaacagctgcggagaagtccttcaataaactcatcatcaatggacgtcgtcttaatgtt
aaatggggcaggtcccaggcggcacgagggaaaggagagaaggacggggtgacggagagt
ggcatcagactggagccggtgccagggcttcctggtgctctgcctccaccacctgtctct
gatgaagatgcgtccaccaattacttcaatctggctcccacaccctcccctgctgtcatg
aacctgggtcttcctcctccacccggggtgaccatgcctcctccacctggatttggtcct
cctatgttccacactatggaccccatggccccgccggtgccacctccaatggccctgaga
ccacccggacaggtccactacccatctcaggatcctcagaggatgggtgcccacgccagt
cgccatggaggcccctag

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