Danio rerio (zebrafish): 406571
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Entry
406571 CDS
T01004
Symbol
utp4
Name
(RefSeq) U3 small nucleolar RNA-associated protein 4 homolog
KO
K14548
U3 small nucleolar RNA-associated protein 4
Organism
dre
Danio rerio (zebrafish)
Pathway
dre03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
406571 (utp4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
dre03009
]
406571 (utp4)
Ribosome biogenesis [BR:
dre03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
406571 (utp4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_CDC20-Fz
WD40_WDHD1_1st
WDR55
WD40_Prp19
WD40
Beta-prop_EML_2
ANAPC4_WD40
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
Beta-prop_NUP159_NUP214
Beta-prop_RIG_2nd
Beta-prop_Vps41
WD40_MABP1-WDR62_2nd
Beta-prop_HPS5
Beta-prop_TEP1_2nd
EIF3I
DUF7165
Beta-prop_CAF1B_HIR1
Beta-prop_IFT140_1st
PROPPIN
Beta-prop_WDR35_TULP_N
Beta-prop_SPT8
RMC1_N
Motif
Other DBs
NCBI-GeneID:
406571
NCBI-ProteinID:
NP_998447
ZFIN:
ZDB-GENE-040426-2466
Ensembl:
ENSDARG00000017675
UniProt:
Q6P125
LinkDB
All DBs
Position
18:15972341..15986106
Genome browser
AA seq
685 aa
AA seq
DB search
MGEFKVHRVRFFEYVPSGIRALAFNQHNERMAAAKMNGSVEIFHCSDRFFQEKIIPGREQ
AGIEGLTWVGERLFSAGLNGVITEYDLTNQRVKYTIDAYGGPIWAITGNQQGTHLAVGCE
DGTVKLFEVTEDKIQFERNLDRQKGRIISLSWHPSGSKIAAGMMDMIQVFNVETGHSKHR
ILVDRGYGTSRGKECVVWSVVYLSDGTIISGDSVGMVKMWRDDTGTLIKSHNITKSDVLS
LSVSQNEDSIVAGTSEGFVVQFQFLSMVLENNEKDWVRTRTFRNHTHDVRAVAEITTAVV
SGGMDTQLVVRPLLDKHEVKSSASKLRKIQFPHRSLVSCARKAGTLLFQYPGHLELWRLG
ESEGEGIPGSSLLLKRKPEKLLHLKVKGEDHIRCSAVSPCGEWIAYSTTSSLRLYKLHCD
SNNVSITKISKLPKVLGSASQLCFSSDSTHLFSASTQSSVHMVSLSQPECKFVATFKTKS
GSHQAIHLLAASEDGKWLASANIDNEVHIYNLQTRKAHCTVPIYSSAVSAMAIHPTTNCL
FMVHADQQIFEFSIEQKEYTDWSRLVQRQGLHRIWLERDTPCLNVTFNQKNPSHVILHDM
YMFCIIDQSQPLPDSKSQFLNQLTLRSLPEEQRKSYSHAFKVCKTFKELLCVDVMGDQSL
VVVERPLEDITAQLPAPIKQKKFAT
NT seq
2058 nt
NT seq
+upstream
nt +downstream
nt
atgggggagtttaaagtacaccgagttcggttctttgaatacgtgccatcaggaattaga
gctttggctttcaaccagcacaatgaaagaatggcagctgcgaagatgaatgggtcagtg
gagattttccactgttcggaccgatttttccaagagaagatcatcccgggcagagagcag
gctgggattgaaggccttacctgggttggggagcgtctgtttagtgcaggactgaatggt
gtgataacagagtatgatcttacaaaccagagggtgaaatacaccatagatgcgtatgga
gggccaatctgggccataacaggcaatcaacaaggaacacacttggcggttggttgtgaa
gatggaactgtgaaactatttgaggtgactgaagacaaaatacagtttgagagaaatctg
gacagacagaaaggccggattatatctctatcctggcacccttcagggtccaaaatagca
gcgggaatgatggatatgatccaagttttcaatgtggagacaggccactctaaacatcgg
atattggtggacagagggtacgggacgtcccgcggtaaggagtgtgtagtgtggagtgtg
gtctacctttcagatgggaccatcatcagcggagactctgtgggaatggtgaaaatgtgg
agggatgacactggtacactgatcaaaagccacaatattacaaaatcggatgtgctttcg
ttatcagtgtctcagaatgaggacagtatcgtggctgggacgtcagaaggatttgtggtg
cagttccagtttctttctatggttttggaaaataatgagaaagattgggtcagaaccaga
acattcaggaaccacacacatgatgttcgagctgtggctgagatcacaacagctgtggtt
tcaggaggtatggacacacagttggttgtgagacctttgttagacaagcatgaagtgaag
tcatcagcctctaagctgcggaagattcagtttccacataggagtttggtgtcctgtgca
aggaaggcaggcacgttactgttccagtaccctggtcatttggagctctggagacttggg
gagagcgaaggagaaggcataccaggaagcagtttacttctaaaaagaaagccagagaag
ctgcttcatttgaaagtgaagggtgaggatcacatccgctgcagtgccgtgtctccctgt
ggtgaatggattgcgtactcgaccaccagcagtttacgcctctacaagctacactgcgac
agtaacaacgtcagcatcaccaagatatccaaacttccaaaggtactgggctcagccagt
cagctctgcttctcttcagactccacccatttgttttctgcctccacacaatcatcagtg
cacatggtctctctcagccaaccagagtgcaagtttgtggccacctttaaaaccaagtca
ggttcccatcaggcaatccacttacttgcagcaagcgaggatggcaaatggttggcatct
gcaaacattgacaacgaggttcacatctacaacctgcagacacggaaggctcattgcaca
gttcctatatacagttcagctgtcagtgccatggccatccatccaacaacaaactgtctg
ttcatggttcatgcagatcaacagatttttgagttttccatcgagcagaaagaatacacg
gattggagcagattggtacagaggcagggccttcataggatttggctggaaagagacaca
ccttgtcttaacgtgacgtttaatcagaagaatccttctcacgtcatcctgcatgatatg
tacatgttctgcatcattgaccaaagccagccactgcctgatagtaaaagtcagttcttg
aatcagcttacactgaggagcctccctgaggaacagaggaaatcttacagccatgctttt
aaagtctgcaagacattcaaggagctcttgtgtgttgatgtgatgggcgatcagtctctg
gtggtggttgaacggcctctcgaggacattaccgctcagttgcctgcgcccatcaaacaa
aagaaatttgccacataa
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