Danio rerio (zebrafish): 406730
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Entry
406730 CDS
T01004
Symbol
apex1
Name
(RefSeq) DNA repair nuclease APEX1 isoform 1
KO
K10771
AP endonuclease 1 [EC:
3.1.11.2
]
Organism
dre
Danio rerio (zebrafish)
Pathway
dre03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
406730 (apex1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dre03400
]
406730 (apex1)
Enzymes [BR:
dre01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.2 exodeoxyribonuclease III
406730 (apex1)
DNA repair and recombination proteins [BR:
dre03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
406730 (apex1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
Motif
Other DBs
NCBI-GeneID:
406730
NCBI-ProteinID:
NP_001315507
ZFIN:
ZDB-GENE-040426-2761
Ensembl:
ENSDARG00000045843
UniProt:
A0A8M1PAH1
LinkDB
All DBs
Position
4:5333988..5339829
Genome browser
AA seq
341 aa
AA seq
DB search
MHFALCRSRTLCVRVCAVSFFRVCGLKTTVNMPKRAKKNEEGVDGESDNGTAAAKKEKKG
KEPEAPILYEDPPEKLTSKDGRAANMKITSWNVDGLRAWVKKNGLDWVRKEDPDILCLQE
TKCAEKALPADITGMPEYPHKYWAGSEDKEGYSGVAMLCKTEPLNVTYGIGKEEHDKEGR
VITAEFPDFFLVTAYVPNASRGLVRLDYRKTWDVDFRAYLCGLDARKPLVLCGDLNVAHQ
EIDLKNPKGNRKNAGFTPEEREGFTQLLEAGFTDSFRELYPDQAYAYTFWTYMMNARSKN
VGWRLDYFVLSSALLPGLCDSKIRNTAMGSDHCPITLFLAV
NT seq
1026 nt
NT seq
+upstream
nt +downstream
nt
atgcattttgctttatgcagatcacgcactttatgtgtacgtgtgtgtgctgtcagtttc
tttcgtgtgtgtggcctgaaaacaactgtaaacatgcccaaaagagccaagaagaacgag
gaaggtgttgatggagagtctgacaatggaactgcagctgcaaagaaagagaaaaagggg
aaagagcccgaggcccccattctatatgaagatcctccagaaaagctgaccagtaaggac
ggccgggcagccaatatgaagatcacctcctggaatgtggacggcctgcgggcgtgggtc
aaaaagaacggacttgattgggtgcggaaggaggatccagacatcctgtgtctgcaggaa
accaagtgtgctgagaaagctctgccggcggacatcactggcatgccagagtatccacac
aaatactgggcaggatcagaggataaggagggctacagtggagtggccatgctctgcaag
accgaaccactcaatgtcacctatggcattggtaaagaggagcacgataaagagggccgg
gtcatcactgccgagtttcctgatttcttcctggtcacggcgtacgtgcctaatgccagt
cgtggtttagtgcggcttgactaccgcaagacttgggatgtggatttccgagcctacctg
tgcggtttagacgcgcgcaaacccctggtgctgtgtggagatctgaacgtggcccaccag
gagatcgatctgaaaaaccccaagggaaaccgcaagaacgcgggcttcacccctgaggaa
cgggagggcttcacacagctcctggaggccggctttactgatagttttcgggagctctat
ccagatcaggcctacgcctacaccttctggacctacatgatgaacgctcgctccaaaaac
gtgggttggcgtttggactactttgtgctgtcgtctgctttgctgccgggtttgtgcgac
agcaagatccgaaacactgccatgggaagtgatcactgtcctattaccttgtttttggca
gtgtag
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