Danio rerio (zebrafish): 406751
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Entry
406751 CDS
T01004
Symbol
srrm1
Name
(RefSeq) serine/arginine repetitive matrix protein 1 isoform 1
KO
K13171
serine/arginine repetitive matrix protein 1
Organism
dre
Danio rerio (zebrafish)
Pathway
dre03013
Nucleocytoplasmic transport
dre03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
406751 (srrm1)
03015 mRNA surveillance pathway
406751 (srrm1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dre03019
]
406751 (srrm1)
03041 Spliceosome [BR:
dre03041
]
406751 (srrm1)
Messenger RNA biogenesis [BR:
dre03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
406751 (srrm1)
Spliceosome [BR:
dre03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR-related proteins
406751 (srrm1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PWI
Motif
Other DBs
NCBI-GeneID:
406751
NCBI-ProteinID:
NP_001352210
ZFIN:
ZDB-GENE-040426-2789
Ensembl:
ENSDARG00000001244
UniProt:
E7F1X7
LinkDB
All DBs
Position
17:26820019..26836366
Genome browser
AA seq
929 aa
AA seq
DB search
MDAGFFRGTSAEQDNRFSNKHKKLLKQLKFAECLEKKVDMTKVNLEVIKPWITQRVTEIL
GFEDDVVIEFVFNQLEEKNPDGKMMQINLTGFLNGKNAREFMKDLWPLLLSAQENIAGIP
SAFLEQKKEEIKQRQIEQEKLASLKKVDEDKREKENKERAQSKSPKRRKSRSPVKRDRKS
SPSRSRSPRRKISPAASPPSSPPNHKEEPKREPDQSESSKPEPLIQEASSTSDLVTEMKP
DSVSEPVKESSPDKTSKSEDRPKPRDREKDGRKDRPRHRSRSRSPRSRRRPRSRSRSFSP
RRRTSPRRRISPRRRSPPRRQPPSRHRRSRSPVRRRRSRSRSSSGSSSSRSPHKRAGKRG
SATPPRKLARRTDLSSPPRRRGRSPSGPDTSPSAGKHRPGGRNDSRSPSPKPRRSDASDS
EEDKLGKGSTADSVQQRRQYRRQNQQSSSDTGSSSSSEDEGPRRQNRGAGARNGEIRRRR
SHSPASPRRRHRDASPRKRRSPSPPGRRHRSQSPVRRRRSPSPPPRRRSPSPPPRRFTPP
IQRRYSPPSPSPAQKRRSSGSPPKRRRSPSPMPKRRIPPSPPPKRRMSPSPPPKRRKSPS
PMSKRRTSPSVSKRRTSPSPVAKHRRSPSPMSKRRTCASPVSKRRNSPSPAPQRRSSPSP
MPKHRGSPSPVTKRHTSRSPKRSRGTSPGKRRTPPSSASPPPRHRRNSPNPPAAQRGRDT
RSSPPAHTTRVSSSPPGRYGASGSSPQRQRRQTSPSHSTRPIRRVSRTPEPRKSQRGSQS
PPPERRQVSRSPSASPPPAQKRPASVSPSRSTSRSPPPPAKKNSSVSPSPSPNKNSDAEG
GKKKKKKKEKKHKKDKKHKKHKKQKKEKGGEEKSGGATGGHGPEAEPDSDQKKESESEVE
DSLDDLEKHLREKALRSMRKAQMSPSSQS
NT seq
2790 nt
NT seq
+upstream
nt +downstream
nt
atggacgcgggttttttccgcggcaccagtgcggagcaggataaccgcttcagcaacaaa
cacaagaaactcttgaagcagctgaagtttgcagaatgtctggagaaaaaggtggatatg
accaaggtcaacctggaagtcatcaagccctggataacccagcgtgtgacagagatactt
ggcttcgaggatgatgtggtcattgaatttgtctttaaccagctggaggaaaagaatcca
gatggaaagatgatgcagattaatttgacaggttttctgaatggaaagaatgctcgggag
ttcatgaaagacctctggccactgttgttaagcgcccaggagaacattgccggtatccca
tcagccttcctggagcagaagaaagaggagatcaaacagagacagattgaacaggagaaa
ctcgcctctctaaaaaaagtagatgaagataaaagggagaaggagaacaaagaaagagct
cagtcaaaaagccctaaacggagaaagtctcgctcccctgtgaagcgtgatcgtaaatcc
agtccttctcgttctcgctctcctcgacgaaaaataagcccagccgcttcaccaccttcc
agtccacccaatcataaagaagaaccgaagcgagaaccagaccagtcagagagctccaaa
ccagagccactcattcaggaagcttcatctaccagtgatcttgtgactgaaatgaagccg
gactcagtgtcagagcctgtgaaagagtcctctccagacaaaacgtcaaaatcagaggac
cggcctaaacccagggacagggagaaggatgggcgcaaagatcgtccacgccaccgctct
cgttctcgatcacctcgctcacgcagacgacctcgatcccgctctaggtcattctctcct
cgccggagaacgagtcccagaaggcgaatctctccgagacggaggagtcctcctagacgc
cagcctccctctagacatagacgtagccgctcacctgttcgcaggcggcggtctcgctcc
cgctcctcctcaggcagctcctcctctcggtcgccccacaagagagcaggaaaacgaggg
tcagcgaccccacccagaaaacttgcacgtcgcacggacctctccagccccccaagaaga
cgaggccgcagtccttcaggaccagacaccagcccttcagctgtgaagcacaggcctggt
ggaagaaatgactctcgctctccctctccaaaacccaggcgatctgatgcatcagattca
gaggaggataagttgggcaaagggtcaacagcagattctgtccagcagcgacgtcagtat
cgcagacaaaatcagcaatcctcttcagacacaggttcatcctcttcatctgaagatgaa
ggtccaaggaggcagaatagaggtgcaggtgccaggaatggtgaaatcaggaggagacgg
agtcattcacctgcatcaccacggaggcggcacagagatgcatccccaagaaaaagacgt
tctccgtcacctcctggacgtagacatcgttcacaatctcctgttcgccgccgcaggtca
ccctctcctcccccaagacgcaggtctccatctccacctccccggcgatttactccccca
attcagcgtcgatacagtcccccctccccttctccagcccaaaagagacggtcatcaggg
tctccccccaaacgaagaaggtctccttcacccatgcccaagcgtagaatacctccttca
cctccccccaaacgcagaatgtctccatcacctccccccaaacgcagaaagtctccatca
ccgatgtcaaaacgcagaacatctccatcggtgtcaaaacgtagaacatcgccttcccct
gtggctaaacacagaaggtctccatcacccatgtctaaacgtagaacatgtgcttcacct
gtgtctaaacgcagaaattctccctcacctgccccgcaacgtagaagttctccttctccc
atgcccaagcatagagggtcaccttcccctgtgactaaacgtcacacctctcgatccccc
aaaaggagtcgtggcaccagtccaggaaaaagacgtactccaccctcttctgcttcacct
cctcctcgtcaccgccgaaactctccaaatccccctgcagcccaacggggcagagacacc
cggtcctctccccctgcccacactacccgagtgtcttccagtcctccaggtagatatgga
gcctctggttcctccccgcagagacaaagacggcagacatcaccatcacacagcaccaga
cccattcgcagggtttcccgcactccagaaccgcgcaaatcgcagagaggttctcagagt
cctccgccagaaaggaggcaggtttcacgttcaccatctgcttctcctcctccggctcag
aagcggcctgcttcagtctcaccctctcgctccactagccgttctccacctccacctgcc
aaaaagaacagcagtgtctccccgagcccttcacctaacaagaactctgatgcagaaggt
ggtaagaagaagaaaaagaagaaagaaaagaaacacaagaaagataagaaacacaagaag
cataagaaacagaaaaaggagaagggtggagaagaaaagagtggtggggcgacaggagga
catggaccggaagcagagccagactctgaccagaaaaaggaatcagagagtgaagtagaa
gacagtttggatgatctggagaagcacctacgtgagaaagctctccgctcaatgaggaag
gcccagatgtctccatcgtctcagtcctga
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