Danio rerio (zebrafish): 406783
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Entry
406783 CDS
T01004
Symbol
upf1
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
dre
Danio rerio (zebrafish)
Pathway
dre03013
Nucleocytoplasmic transport
dre03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
406783 (upf1)
03015 mRNA surveillance pathway
406783 (upf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dre03019
]
406783 (upf1)
Enzymes [BR:
dre01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
406783 (upf1)
5.6.2.5 RNA 5'-3' helicase
406783 (upf1)
Messenger RNA biogenesis [BR:
dre03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
406783 (upf1)
mRNA cycle factors
Common to processing body (P body) and stress granule
406783 (upf1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
ATPase
nSTAND3
NAT10_TcmA_helicase
DEAD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
406783
NCBI-ProteinID:
NP_998639
ZFIN:
ZDB-GENE-040426-2836
Ensembl:
ENSDARG00000016302
UniProt:
F1RCY6
LinkDB
All DBs
Position
2:59500210..59567002
Genome browser
AA seq
1100 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTQGQTQSQLDNQVNG
PDGVLPNGEDAVGKTSQLLAELNFEEDEEDTYYTKVLPVHACSYCGIHDPACVVYCNTSK
KWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAKA
DSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQ
INKLEELWKENPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLK
ESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGDMRLMQGDEICLRYKGDMAPLWKGIGHV
IKVPDNYGDEIAIELRSSAGAPVEVPHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGY
IYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTV
TSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLA
LHNQIRNMDSMPELQKLQQLKDETGELSSSDEKRYRALKRTAERELLMNADVICCTCVGA
GDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGL
SQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRLKKGFDFQWP
QPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPDQIGIITPYEGQR
SYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLN
VALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLV
NTINPGARFMSTAMYDAREAMIPGSVYDRSSTGRPSNMYFQTHDQVGMIGTGPNPMGSLN
IPIPFNLVMPPMPPPGYLGQVNGPAAGRGAPKGKTGGRGGRQRNRGTGNHGSGQPNMPNS
QASQDLVSQPFSQGPLTQGYITMSQPSQMSQPGLSQPELSQDSYLGDEFKSQMDVALSQD
STYQGERAYQHGGVTGLSQY
NT seq
3303 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtggaggcgtacgggccgagctcgcagacgctcaccttcctggacaccgaggaa
gcggagctgctcggggccgacacgcagggctccgagttcgagtttaccgattttacgctg
cccagccagacccagacgcaaggccagacacagagtcagctcgacaaccaggtgaacggg
cctgatggagttctgcccaatggagaagatgcagtggggaaaaccagccaacttctggcc
gagctgaactttgaggaggacgaggaagacacttactacactaaagacctgccggtgcac
gcctgcagctactgtggaatccatgatcccgcatgtgtggtttactgcaacaccagcaag
aagtggttttgcaacggccgcggcaacacctctggcagtcatattgtgaaccacctggtg
agggccaaatgtaaggaggtgacgctgcataaggacgggccgctgggagagactgttctg
gagtgctacaactgtggctgccgtaacgtcttcctgctcggcttcatccctgcgaaagca
gactctgtggtggtgcttctgtgcaggcagccgtgtgccagtcagagcagtctgaaggac
attaactgggacagctctcaatggcagcccctcatccaggaccgatgctttctctcctgg
ctggtgaagatcccgtctgagcaggagcagctgagggcccggcagatcacggcgcagcag
attaacaaactggaggagctctggaaggaaaacccaacagcgacgctggaagatctggag
aagcctggagtagatgaggagccgcagcacgttctgctacgatatgaagacgcctatcag
taccagaacatttttggtccactggttaaactagaggccgactatgacaagaagctcaaa
gagtcccaaactcaagacaatataacagtgaggtgggatttgggactgaataaaaagcgg
atagcttatttcactctgcccaagacggattcaggtgacatgcggctgatgcaaggagac
gagatctgtctgcgctataaaggagacatggctccgctctggaaaggcatcggacatgtc
atcaaagtcccggacaattatggagatgaaattgccatcgagctgcgcagcagtgctggt
gcacctgtggaggtgccacataacttccaggtggactttgtgtggaagtcgacatctttt
gatcgaatgcagagcgccctgaagacgtttgctgtggatgagacctctgtgtcaggctac
atctaccacaagctgctgggtcacgaggtggaggacgtgatcatcaaatgccagctacct
aaacgcttcactgcgcagggcctgccagacctcaaccactcgcaggtttatgccgtgaag
acggtactccagcggcccctcagtctgatccaggggcctccaggaactggaaagacggtc
acttctgccaccatcgtctatcatctagcgagacagggcaatggtccagtgctggtttgt
gcgccgagtaacatcgctgtggaccagctaacagagaagatccatcagacgggactgaag
gtggttcgtctgtgtgctaagagtcgtgaggccatcgattcacctgtgtctttcctggct
ctgcacaatcagatccgcaacatggacagcatgccagagttgcagaagcttcagcagctg
aaggatgaaactggcgagctttcgtcctctgatgagaaacgttaccgtgctctcaaacga
actgcagagagagagctgctcatgaatgcagatgtgatctgctgcacatgtgtgggtgcg
ggtgaccctcgtctggctaaaatgcagttccgctccattctcatcgatgaaagcacacag
gccacggagcccgagtgcatggtgccagtggtgctcggggccaaacagctgattctggtg
ggtgaccactgtcagctgggccctgtggtcatgtgtaagaaagcggcgaaagcaggcctt
tctcagtctctgttcgagaggctggtggtgctgggcatcagacccatccgtctgcaggtg
cagtatcgcatgcacccggcactcagtgctttcccatcaaacatcttctatgagggatct
ctgcagaacggggtcactgccgctgatcgccttaagaaaggctttgacttccagtggcct
cagcctgataagcccatgtttttctacgtgacccagggccaggaggagatcgccagctcc
ggcacctcatatctcaacaggactgaggctgctaatgtggagaagatcaccactcgtctg
ctgaaggctggagccaaacctgaccagattggcatcatcacgccgtatgagggccagcgc
tcttacctggtgcagtacatgcagttcagcggctcattgcacaccaaactctaccaggag
gtggagatcgccagtgtggatgcatttcaaggcagagagaaggacttcatcatcctgtcc
tgtgtcagagctaatgaacaccagggcatcggcttcctgaacgacccgcgccgtctcaac
gtggcactcaccagagccagatatggggtgatcattgtgggcaaccctaaagctctgtcc
aaacagcccctgtggaaccacctgctgaactactacaaggagcagaaggtgctggtggag
ggtcctctcaacaacctgagggagagtctcatgcagttcagcaaaccacgcaaactggtc
aacaccatcaaccctggagcccgcttcatgagtaccgccatgtatgatgcaagggaggcc
atgattcctggatctgtgtatgatcgcagcagcactggacgtccatctaatatgtacttc
cagactcatgatcaggtgggcatgatcgggacggggccgaatccgatgggctctttgaac
atccccatcccattcaatctggtcatgccgccgatgcctccgcctgggtacctgggacag
gtgaacggacctgctgcaggtcgtggtgctcctaaaggtaagaccgggggtcgtggaggt
cgacagaggaaccgtggcactgggaatcatggcagcgggcagccgaacatgcccaacagt
caggccagccaggacctggtgtctcagcccttctctcagggtccgctgacccagggctat
atcaccatgagccagccttcacagatgagccagccgggcctgtcccagccggagctctca
caggacagctacctgggtgatgagttcaagtctcagatggatgttgcgctgtcccaggac
tccacctaccagggcgaacgggcatatcaacacggaggagtgactggactctcacagtac
tag
DBGET
integrated database retrieval system
