| Entry |
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| Symbol |
upf1
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| Name |
(RefSeq) regulator of nonsense transcripts 1
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| KO |
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| Organism |
dre Danio rerio (zebrafish)
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| Pathway |
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| Brite |
KEGG Orthology (KO) [BR:dre00001]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
406783 (upf1)
03015 mRNA surveillance pathway
406783 (upf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:dre03019]
406783 (upf1)
Enzymes [BR:dre01000]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
406783 (upf1)
5.6.2.5 RNA 5'-3' helicase
406783 (upf1)
Messenger RNA biogenesis [BR:dre03019]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
406783 (upf1)
mRNA cycle factors
Common to processing body (P body) and stress granule
406783 (upf1)
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| SSDB |
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| Motif |
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| Other DBs |
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| LinkDB |
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| Position |
2:56169420..56235045
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| AA seq |
1100 aa
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTQGQTQSQLDNQVNG
PDGVLPNGEDAVGKTSQLLAELNFEEDEEDTYYTKVLPVHACSYCGIHDPACVVYCNTSK
KWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAKA
DSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQ
INKLEELWKENPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLK
ESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGDMRLMQGDEICLRYKGDMAPLWKGIGHV
IKVPDNYGDEIAIELRSSAGAPVEVPHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGY
IYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTV
TSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLA
LHNQIRNMDSMPELQKLQQLKDETGELSSSDEKRYRALKRTAERELLMNADVICCTCVGA
GDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGL
SQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRLKKGFDFQWP
QPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPDQIGIITPYEGQR
SYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLN
VALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLV
NTINPGARFMSTAMYDAREAMIPGSVYDRSSTGRPSNMYFQTHDQVGMIGTGPNPMGSLN
IPIPFNLVMPPMPPPGYLGQVNGPAAGRGAPKGKTGGRGGRQRNRGTGNHGSGQPNMPNS
QASQDLVSQPFSQGPLTQGYITMSQPSQMSQPGLSQPELSQDSYLGDEFKSQMDVALSQD
STYQGERAYQHGGVTGLSQY |
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| NT seq |
3303 nt +upstreamnt +downstreamnt
atgagtgtggaggcgtacgggccgagctcgcagacgctcaccttcctggacaccgaggaa
gcggagctgctcggggccgacacgcagggctccgagttcgagtttaccgattttacgctg
cccagccagacccagacgcaaggccagacacagagtcagctcgacaaccaggtgaacggg
cctgatggagttctgcccaatggagaagatgcagtggggaaaaccagccaacttctggcc
gagctgaactttgaggaggacgaggaagacacttactacactaaagtcctgccggtgcac
gcctgcagctactgtggaatccatgatcccgcatgtgtggtttactgcaacaccagcaag
aagtggttttgcaacggccgcggcaacacctctggcagtcatattgtgaaccacctggtg
agggccaaatgtaaggaggtgacgctgcataaggacgggccgctgggagagactgttctg
gagtgctacaactgtggctgccgtaacgtcttcctgctcggcttcatcccggcgaaagca
gactctgtggtggtgcttctgtgcaggcagccgtgtgccagtcagagcagtctgaaggac
attaactgggacagctctcaatggcagcccctcatccaggaccgatgctttctctcctgg
ctggtgaagatcccgtctgagcaggagcagctgagggcccggcagatcacggcgcagcag
attaacaaactggaggagctctggaaggaaaacccaacagcgacgctggaagatttggag
aagcctggagtagatgaggagccgcagcacgttctgctgcgatatgaagacgcctatcag
taccagaacatttttggtccactggttaaactagaggccgactatgacaagaagctcaaa
gagtcccaaactcaagacaatataacagtgaggtgggatttgggactgaataaaaagcgg
atagcttatttcactctgcccaagacggattcaggtgacatgcggctgatgcaaggagac
gagatctgtctgcgctataaaggagacatggctccgctctggaaaggcatcggacatgtc
atcaaagtcccggacaattatggagatgaaattgccatcgagcttcgtagcagtgctggt
gcacctgtggaggtgccgcataacttccaggtggactttgtgtggaagtcgacatctttt
gatcgaatgcagagcgccctgaagacgtttgctgtggatgagacctctgtgtcaggctac
atctaccacaagctgctgggtcacgaggtggaggacgtgatcatcaaatgccagctacct
aaacgcttcactgcgcagggcctgccagacctcaaccactcgcaggtttatgccgtgaag
acggtactccagcggcccctcagtctgatccaggggcctccaggaactggaaagacggtc
acttctgccaccatcgtctatcatctagcgagacagggcaatggtccagtgctggtttgt
gcgccgagtaacatcgctgtggaccagctaacagagaagatccatcagacgggactgaag
gtggttcgtctgtgtgctaagagtcgtgaggccatcgattcacctgtgtctttcctggct
ctgcacaatcagatccgcaacatggacagcatgccagagttgcagaagcttcagcagctg
aaggatgaaactggcgagctttcgtcctctgatgagaaacgttaccgcgctctcaaacga
actgcagagagagagctgctcatgaatgcagatgtgatctgctgcacatgtgtgggtgcg
ggtgaccctcgtctggctaaaatgcagttccgctccattctcatcgatgaaagcacacag
gccacggagcccgagtgcatggtgccagtggtgctcggggccaaacagctgattctggtg
ggtgaccactgtcagctgggccctgtggtcatgtgtaagaaagcagcgaaagcaggcctt
tctcagtctctgttcgagaggctggtggtgctgggcatcagacccatccgtctgcaggtg
cagtatcgcatgcacccggcgctcagtgctttcccatcaaacatcttctatgagggatct
ctgcagaacggggtcactgccgctgatcgccttaagaaaggctttgacttccagtggcct
cagcctgataagcccatgtttttctacgtgacccagggccaggaggagatcgccagctcc
ggcacctcatatctcaacaggactgaggctgctaatgtggagaagatcaccactcgtctg
ctgaaggctggagccaaacctgaccagattggcatcatcacgccgtatgagggccagcgc
tcttacctggtgcagtacatgcagttcagcggctcattgcacaccaaactctaccaggag
gtggagatcgccagtgtggatgcatttcaaggcagagagaaggacttcatcatcctgtcc
tgtgttagagctaatgaacaccagggcatcggcttcctgaacgacccgcgccgtctcaac
gtggcactcaccagagccagatatggggtgatcattgtgggcaaccctaaagctctgtcc
aaacagcccctgtggaaccacctgctgaactactacaaggagcagaaggtgctggtggag
ggtcctctcaacaacctgagggagagtctcatgcagttcagcaaaccacgcaaactggtc
aacaccatcaaccctggagcccgcttcatgagtaccgccatgtatgatgcaagggaggcc
atgattcctggatctgtgtatgatcgcagcagcactggacgtccatctaatatgtacttc
cagactcatgatcaggtgggcatgatcgggacggggccgaatccgatgggctctttgaac
atccccatcccattcaatctggtcatgccgccgatgcctccgcctgggtacctgggacag
gtgaacggacctgctgcaggtcgtggtgctcctaaaggtaagaccgggggtcgtggaggt
cgacagaggaaccgtggcactgggaatcatggcagcgggcagccgaacatgcccaacagt
caggccagccaggacctggtgtctcagcccttctctcagggtccgctgacccagggctat
atcaccatgagccagccttcacagatgagccagccgggcctgtcccagccggagctctca
caggacagctacctgggtgatgagttcaagtctcagatggatgttgcgctgtcccaggac
tccacctaccagggcgaacgggcatatcaacacggaggagtgactggactctcacagtac
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