Danio rerio (zebrafish): 406795
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Entry
406795 CDS
T01004
Symbol
mtrex
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
dre
Danio rerio (zebrafish)
Pathway
dre03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
406795 (mtrex)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dre03019
]
406795 (mtrex)
03041 Spliceosome [BR:
dre03041
]
406795 (mtrex)
03009 Ribosome biogenesis [BR:
dre03009
]
406795 (mtrex)
03016 Transfer RNA biogenesis [BR:
dre03016
]
406795 (mtrex)
Enzymes [BR:
dre01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
406795 (mtrex)
Messenger RNA biogenesis [BR:
dre03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
406795 (mtrex)
Spliceosome [BR:
dre03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
406795 (mtrex)
Complex C
U4/U6.U5 tri-SnRNP related factors
406795 (mtrex)
Ribosome biogenesis [BR:
dre03009
]
Eukaryotic type
Pre-60S particles
Helicases
406795 (mtrex)
Transfer RNA biogenesis [BR:
dre03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
406795 (mtrex)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
AAA_22
nSTAND3
Mt_ATP-synt_D
Motif
Other DBs
NCBI-GeneID:
406795
NCBI-ProteinID:
NP_999933
ZFIN:
ZDB-GENE-040426-2854
Ensembl:
ENSDARG00000013457
UniProt:
Q6P7X6
LinkDB
All DBs
Position
10:8750595..8819250
Genome browser
AA seq
1034 aa
AA seq
DB search
MADAFGDDLFSVFDEEQAGSSKKAAPKSAANAGKTPDKAGKPQGDSASLRKRDADDDGPD
EMLLGKRQKLETVSAEEINLSELMPKVKSEQVETVEGCTHEVVLPANEEYTPLKPRVGKA
AKEYPFILDPFQREAILCIDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIFTSPIK
ALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEVMREVAWVIFD
EIHYMRDSERGVVWEETIILLPDNVHHVFLSATVPNARQFAEWICHLHKQPCHVVYTDYR
PTPLQHYIFPAGGDGLHLVVDENGEFREDNFNTAMQVLRDAGDTGGNTGAKWDPKGRKGG
TKGPSNVFKIVKMIMERNFQPVIIFSFSKKECEAYALQVSKLDFNTDEEKKLVEEVFNNA
TDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLLKALFATETFAM
GINMPARTVLFTSARKFDGKDFRWISSGEYIQMSGRAGRRGMDERGIVIFMVDEKMSPAV
GKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAVPGVVDRMKK
LEEEYNAIRIPKEESVVTYYKIRQQLAKLGKEIEEFIHKPRYCLPFLQPGRLVKVKKEDL
DFGWGVVVNFQKKSNVKAGGDLDPLFVVEVLVHCSKDSVKNAATESARPAGPAEKGEMQV
VPVILHLITSISSVRLYIPKDLRPYDNRQSMLKSIQEVQKRFPDGIPLLDPIDDMGIKDP
ALKKVIQKVEAFEHRMYTHPLHSDPNLEAVYKLCEKKALIAGDIKAAKRELKKARTVLQM
DELKCRKRVLRRLGFATSSDVIEMKGRVACETSSGDELLLTEMMFNGLFNDLTAEQATAL
LSCFVFQENANEMPKLTEQLGGPLRQMQECAKRIAKVSAEAKLEVDEDSYLNQFRPHLMD
VVYTWANGSSFSQICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFATGIT
KIKRDIVFAASLYL
NT seq
3105 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgcctttggagacgatttgttcagcgtgtttgatgaagaacaggccggttcc
agcaaaaaggccgctccaaagtccgcagctaatgcagggaaaacgcctgataaagctggc
aaaccacagggagattcagcatctttgcgcaaaagagatgctgatgatgatggtcctgat
gagatgctgctggggaaaaggcaaaagctggaaacggtgtcagcggaggagatcaatctg
tcagagcttatgccgaaagtgaaatcagagcaggtggagacagtggagggctgcactcat
gaggtggttcttcctgccaatgaggaatacactccgctgaaaccacgtgttggaaaagct
gccaaggagtatcccttcatactcgaccctttccagcgcgaggccatcctgtgcatcgat
aacaaccagtctgtgcttgtgtcggcccacacgtcagcaggaaagaccgtgtgtgccgag
tatgccattgctctggcactcagagaaaagcagcgtgtcatcttcaccagccccatcaaa
gctctgagcaaccaaaagtacagagagatgtacgaggagtttcaggatgtggggctgatg
accggtgatgtcactattaaccccactgcttcctgtctggtcatgaccacagagattttg
aggagcatgctgtacagggggtcagaggtcatgagggaggtggcatgggtcatctttgat
gagatccattacatgagagactcagaacgtggcgtggtctgggaagagaccatcatcctg
ctgccagataatgtacaccatgttttcctttctgccaccattcctaatgctagacagttc
gcagagtggatttgtcacctccacaaacagccttgtcacgtggtgtacacagactaccgt
cccactccactgcagcactacatctttccagcagggggcgatggactccatcttgtcgtg
gatgagaacggagagtttagagaagacaattttaacaccgcaatgcaggtccttagggat
gcgggggacacaggaggcaacactggggccaaatgggaccccaaaggcagaaaaggtgga
acaaaaggtccatctaacgtcttcaagatcgtgaagatgattatggagaggaacttccag
ccggtgatcatcttcagcttcagtaagaaagagtgtgaggcctatgctctgcaagtctcc
aaactggatttcaacacagacgaagagaaaaaactggtagaagaagtgttcaacaatgcc
acagactgcctctctgatgaggacaaaaaactgccacaggtggagcatgtgttgccgctg
ctcaagagaggaataggcattcatcatggtggcctcttgcccatcctgaaggagaccatt
gagatcctcttttctgaggggctgctgaaggccttattcgctacagaaacatttgccatg
gggatcaacatgcctgcgcgaaccgttctcttcaccagtgctcgaaaattcgacggcaaa
gacttccgctggatctcctctggagagtatatccagatgtcaggacgtgccggcagaaga
ggaatggacgaaaggggaatcgtcatattcatggttgatgagaagatgagccctgcagtc
ggcaaacaattactgaagggttcagcagatcctctgaacagtgcgtttcacctgacctac
aacatggtgctcaatctgctgcgtgtggaggagatcaacccagagtacatgctggagaaa
tccttttaccagttccagcactacagagccgtgcctggcgttgtggataggatgaaaaag
ctggaggaggaatataacgccatacgaatccccaaggaggagagcgtggtgacctactac
aagattcgccaacagttggccaaattgggcaaagaaatcgaggagtttattcacaaaccc
agatactgcctgcccttcttacagccaggcagactggtcaaggtaaaaaaagaagatctg
gattttggttggggtgtagtcgtcaatttccaaaagaagtcaaatgtcaaggctggcggt
gaccttgatccactgtttgtggtggaagttctggttcactgcagtaaagacagcgtgaag
aacgccgccacggagtcagccagacccgctggccctgcagagaagggagagatgcaggtc
gttcctgtgattcttcatctcatcacctctattagttctgtgcgcctctacatccctaaa
gacctgcggccctatgataaccggcagagcatgctcaaatccatacaggaggtgcagaaa
cgtttcccagatgggataccgttgctggatcccatagatgacatgggaatcaaggatccc
gccctgaagaaggtcatccagaaggtggaggcattcgagcacaggatgtacacgcacccg
ctgcacagcgaccccaacctggaggccgtttacaaactctgtgagaagaaagcgctgatt
gcgggtgatattaaagcagcaaagcgagagctaaagaaagcccgcaccgtgttgcagatg
gatgagttgaagtgcagaaagcgtgtgctgcgccgactgggattcgctacttcctctgat
gtcatcgagatgaagggccgtgtggcatgcgagatcagcagtgcagatgagctgctgctg
acagagatgatgtttaacggcttgttcaatgacctgacggcggagcaggccaccgctctc
ctcagctgcttcgtcttccaggaaaacgccaacgagatgcccaaactgacagagcagctg
ggcggtccactgagacagatgcaggaatgtgccaagagaattgctaaagtgtctgcagag
gccaagctggaagtggacgaggacagttacctgaaccagttccgtccgcacctgatggat
gtggtctacacctgggccaatggctcttctttctctcagatttgcaaaatgacagacgtg
tttgaaggcagtattatccgctgtatgcgcagactggaggagctcttaaggcagatgtgc
caggcagctaaggccattggaaacacagagttggagaataagtttgcaaccggtataacg
aagattaagagggatatcgtgtttgctgcaagtctatacctctaa
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