| Entry |
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| Symbol |
mtrex
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| Name |
(RefSeq) exosome RNA helicase MTR4
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| KO |
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| Organism |
dre Danio rerio (zebrafish)
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| Pathway |
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| Brite |
KEGG Orthology (KO) [BR:dre00001]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
406795 (mtrex)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:dre03019]
406795 (mtrex)
03041 Spliceosome [BR:dre03041]
406795 (mtrex)
03009 Ribosome biogenesis [BR:dre03009]
406795 (mtrex)
03016 Transfer RNA biogenesis [BR:dre03016]
406795 (mtrex)
Enzymes [BR:dre01000]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
406795 (mtrex)
Messenger RNA biogenesis [BR:dre03019]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
406795 (mtrex)
Spliceosome [BR:dre03041]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
406795 (mtrex)
Complex C
U4/U6.U5 tri-SnRNP related factors
406795 (mtrex)
Ribosome biogenesis [BR:dre03009]
Eukaryotic type
Pre-60S particles
Helicases
406795 (mtrex)
Transfer RNA biogenesis [BR:dre03016]
Eukaryotic type
tRNA degradation factors
TRAMP complex
406795 (mtrex)
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| SSDB |
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| Motif |
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| Other DBs |
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| LinkDB |
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| Position |
10:8197849..8266094
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| AA seq |
1034 aa
MADAFGDDLFSVFDEEQAGSSKKAAPKSAANAGKTPDKAGKPQGDSASLRKRDADDDGPD
EMLLGKRQKLETVSAEEINLSELMPKVKSEQVETVEGCTHEVVLPANEEYTPLKPRVGKA
AKEYPFILDPFQREAILCIDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIFTSPIK
ALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEVMREVAWVIFD
EIHYMRDSERGVVWEETIILLPDNVHHVFLSATVPNARQFAEWICHLHKQPCHVVYTDYR
PTPLQHYIFPAGGDGLHLVVDENGEFREDNFNTAMQVLRDAGDTGGNTGAKWDPKGRKGG
TKGPSNVFKIVKMIMERNFQPVIIFSFSKKECEAYALQVSKLDFNTDEEKKLVEEVFNNA
TDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLLKALFATETFAM
GINMPARTVLFTSARKFDGKDFRWISSGEYIQMSGRAGRRGMDERGIVIFMVDEKMSPAV
GKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAVPGVVDRMKK
LEEEYNAIRIPKEESVVTYYKIRQQLAKLGKEIEEFIHKPRYCLPFLQPGRLVKVKKEDL
DFGWGVVVNFQKKSNVKAGGDLDPLFVVEVLVHCSKDSVKNAATESARPAGPAEKGEMQV
VPVILHLITSISSVRLYIPKDLRPYDNRQSMLKSIQEVQKRFPDGIPLLDPIDDMGIKDP
ALKKVIQKVEAFEHRMYTHPLHSDPNLEAVYKLCEKKALIAGDIKAAKRELKKARTVLQM
DELKCRKRVLRRLGFATSSDVIEMKGRVACETSSGDELLLTEMMFNGLFNDLTAEQATAL
LSCFVFQENANEMPKLTEQLGGPLRQMQECAKRIAKVSAEAKLEVDEDSYLNQFRPHLMD
VVYTWANGSSFSQICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFATGIT
KIKRDIVFAASLYL |
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| NT seq |
3105 nt +upstreamnt +downstreamnt
atggcggacgcctttggagacgatttgttcagcgtgtttgatgaagaacaggccggttcc
agcaaaaaggccgctccaaagtccgcagctaatgcagggaaaacgcctgataaagctggc
aaaccacagggagattcagcatctttgcgcaaaagagatgctgatgatgatggtcctgat
gagatgctgctggggaaaaggcaaaagctggaaacggtgtcagcggaggagatcaatctg
tcagagcttatgccgaaagtgaaatcagagcaggtggagacagtggagggctgcactcat
gaggtggttcttcctgccaatgaggaatacactccgctgaaaccacgtgttggaaaagct
gccaaggagtatcccttcatactcgacccttttcagcgtgaggccatcctgtgcatcgat
aacaaccagtctgtgcttgtgtcggcccacacgtcagcaggaaagaccgtgtgtgccgag
tatgccattgctctggcactcagagaaaagcagcgtgtcatcttcaccagccccatcaaa
gctctgagcaaccagaagtacagagagatgtacgaggagtttcaggacgtggggctgatg
accggtgatgtcactattaaccccactgcttcctgtctggtcatgaccacagagattttg
aggagcatgctgtacagggggtcagaggtcatgagggaggtggcatgggtcatctttgat
gagatccattacatgagagactcagaacgtggcgtggtctgggaagagaccatcatcctg
ctaccagataatgtacaccatgttttcctttctgccaccgttcctaatgctagacagttc
gcagagtggatttgtcacctccacaaacagccttgtcacgtggtgtacacagactaccgt
cccactccattgcagcactacatctttccagcagggggcgatggactccatcttgtcgtg
gatgagaacggagagttcagagaagacaattttaacaccgcaatgcaggtccttagggat
gcgggggatacaggaggcaacactggggccaaatgggaccccaaaggcagaaaaggtgga
acaaaaggtccatctaacgtcttcaagatcgtgaagatgatcatggagaggaacttccag
cctgtgatcatcttcagcttcagtaagaaagagtgtgaggcctatgctctgcaagtctcc
aaactggatttcaacacagacgaagagaaaaaactggtagaagaagtgttcaacaatgcc
acagactgcctctctgatgaggacaaaaaactgccacaggtggagcatgtgttgccgctg
ctcaagagaggaataggcattcatcatggtggcctcttgcccatcctgaaggagaccatt
gagatcctcttttctgaggggctgctgaaggccttattcgctacagaaacatttgccatg
gggatcaacatgcctgcgcgaaccgttctcttcaccagtgctcgaaaattcgacggcaaa
gacttccgctggatctcctctggagagtatatccagatgtcaggacgtgccggcagaaga
ggaatggacgaaaggggaatcgtcatattcatggttgatgagaagatgagccctgcagtc
ggcaaacaattactgaagggttcggcagatcctctgaacagtgcgtttcacctgacctac
aacatggtgctcaatctgctgcgtgtggaggagatcaacccagagtacatgctggagaaa
tccttttaccagttccagcactacagagccgtgcctggcgttgtggataggatgaaaaag
ctggaggaggaatataacgccatacgaatccccaaggaggagagcgtggtgacctactac
aagattcgccaacagctggccaaattgggcaaagaaatcgaggagtttattcacaaaccc
agatactgcctgcccttcttacagccaggcagactggtcaaggtaaaaaaagaagatctg
gattttggttggggtgtagtcgtcaatttccaaaagaagtcaaatgtcaaggctggcggt
gaccttgacccactgtttgtggtggaagttctggttcactgcagtaaagacagcgtgaag
aacgccgccacggagtcagccagacccgctggccctgcagagaagggagagatgcaggtc
gttcctgtgattcttcatctcatcacctctattagttctgtgcgcctctacatccctaaa
gacctgcggccctatgataaccggcagagcatgctcaaatccatacaggaggtgcagaaa
cgtttcccagatgggataccgttgctggatcccatagatgacatgggaatcaaggatccc
gccctgaagaaggtcatccagaaggtggaggcattcgagcacaggatgtacacgcacccg
ctgcacagcgaccccaacctggaggccgtttacaaactctgtgagaagaaagcgctgatt
gcgggtgatattaaagcagcaaagcgagagctaaagaaagcccgcaccgtgttgcagatg
gatgagttgaagtgcagaaagcgtgtgctgcgccgactgggattcgctacttcctctgat
gtcatcgagatgaagggccgtgtggcatgcgagaccagcagtggagatgagctgctgctg
acagagatgatgtttaacggcttgttcaatgacctgacggcggagcaggccaccgctctc
ctcagctgcttcgtcttccaggaaaacgccaacgagatgcccaaactgacagagcagctg
ggcggtccactgagacagatgcaggaatgtgccaagagaattgctaaagtgtctgcagag
gccaagctggaagtggacgaggacagttacctgaaccagttccgtccgcacctaatggat
gtggtctacacctgggccaatggctcttccttctctcagatttgcaaaatgacagacgtg
tttgaaggcagtattatccgctgtatgcgcagactggaggagctcttaaggcagatgtgc
caggcagctaaggctattggaaacacagagttggagaataagtttgcaaccggtataacg
aagattaagagggatatcgtgtttgctgcaagtctatacctctaa |
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