Danio rerio (zebrafish): 406810
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Entry
406810 CDS
T01004
Symbol
prpf38b
Name
(RefSeq) pre-mRNA-splicing factor 38B isoform X1
KO
K12850
pre-mRNA-splicing factor 38B
Organism
dre
Danio rerio (zebrafish)
Pathway
dre03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
406810 (prpf38b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dre03041
]
406810 (prpf38b)
Spliceosome [BR:
dre03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
406810 (prpf38b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PRP38
Motif
Other DBs
NCBI-GeneID:
406810
NCBI-ProteinID:
XP_073771131
ZFIN:
ZDB-GENE-040426-2878
Ensembl:
ENSDARG00000053101
LinkDB
All DBs
Position
2:complement(48883745..48892405)
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AA seq
501 aa
AA seq
DB search
MAGSQQQQQQQAVSKPTGGKHGNNLPLWGNEKTMNLNPMILTNVLSSPYFKVQLYELKTY
HEVVDEIYFKVNHVEPWEKGSRKTAGQTGMCGGVRGVGTGGIVSTAFCLLYKLFTLKLTR
KQVMGLITHSDSPYIRALGFMYIRYTQPPPDLVDWYDEFLDDEEELDVKAGGGCVMTVGE
MLRSFLTKLEWFSTLFPRIPVPVQKAIDQHMKSRPRKPPQKDEQEEEEEEATAAPAADTG
RHGDRRRSRTPRRSPSPRKSQNRSRSRSHHRERHGASFDHELERERDRQRKEREGKDRDR
DRDRDRERDRERDRDRRRSRTPDRNTERRRSRSRERRRSRSTSRDKRTERKDRDKDREAE
SERERSRKKDREHHKDRERSKDKRSKGEGEERRHKDDKEEKKHREEKRSKRSRSRSRDRK
HKAERSSKKRSRSGSRSRQEAGEEKNRKRERSHSKDRQHKRSRSKERSHRRESSNERIHA
RQERPSSESGERTNSVRADSP
NT seq
1506 nt
NT seq
+upstream
nt +downstream
nt
atggcgggtagtcagcagcaacaacagcagcaggccgtgagcaaaccgaccggcgggaaa
cacggcaataatttgccattatggggcaacgagaagactatgaacctcaaccctatgatt
ctgacaaacgtgctttcttcaccctacttcaaggtccagctgtacgagctcaagacgtac
cacgaggtggtggacgagatttacttcaaggtcaaccatgtggagccatgggaaaaaggc
agcaggaagacagctgggcagacgggaatgtgcggaggggttcgaggagtcgggacaggt
ggaatcgtgtccacggcgttttgtctgctgtataaactgttcacactaaagctgacacgg
aaacaagtgatgggtcttatcactcactccgattcaccctatatcagggcattgggcttc
atgtacatcaggtatactcaacctcctcctgacttggttgactggtatgatgagttcctt
gacgacgaggaggagctggacgtgaaagctggaggagggtgtgttatgacggttggagag
atgcttcgctcctttctgaccaagctggagtggttctcaacattgtttccaagaatacct
gtacctgtgcagaaggcaattgatcagcacatgaagagccgaccgcgtaaacccccacaa
aaagatgagcaggaagaagaggaggaagaggccacagcagcaccagcagccgatacaggc
aggcatggagataggcgccgttccaggacacctaggagaagtccaagtcccaggaaatcc
cagaatcgttcccggagtcgcagccatcacagagaaaggcatggtgctagctttgatcat
gaactggagagagaacgagaccgtcagcgcaaggaacgggaaggaaaggaccgggacaga
gatagagacagggaccgagagagagacagggagagagacagagatagacgacgttccaga
actccagaccgaaacacagaacgccggcggagcagaagcagggaacgacgccggagtcgc
agcaccagccgagacaagagaacggagagaaaagaccgagataaagacagagaggcagag
agtgagagagagcgtagtcgcaagaaagacagggagcaccataaagatcgagagaggtca
aaagacaagaggagtaaaggagagggagaggagcggaggcacaaggatgataaggaggag
aaaaaacacagggaagaaaagagaagtaaacgctcgagaagcagaagcagagaccgcaaa
cacaaagctgagagatctagcaagaaacgctcccgctctggcagcaggagcaggcaggaa
gccggggaagagaagaacaggaagcgggaacgcagccatagtaaggatcgccaacacaag
cgcagtcgcagcaaagagcgatcgcaccgtcgggaatccagcaatgaacgaatacatgca
agacaagagcgccccagttctgaatctggagaacgaacaaacagtgttcgagcagattct
ccctga
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