Entry |
|
Symbol |
sf3b3
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Name |
(RefSeq) splicing factor 3B subunit 3
|
KO |
K12830 | splicing factor 3B subunit 3 |
|
Organism |
dre Danio rerio (zebrafish)
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Pathway |
|
Brite |
KEGG Orthology (KO) [BR:dre00001]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
406824 (sf3b3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:dre03021]
406824 (sf3b3)
03041 Spliceosome [BR:dre03041]
406824 (sf3b3)
03036 Chromosome and associated proteins [BR:dre03036]
406824 (sf3b3)
Transcription machinery [BR:dre03021]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
406824 (sf3b3)
Spliceosome [BR:dre03041]
Complex A
U2 snRNP components
U2 snRNP specific factors
406824 (sf3b3)
Complex B
406824 (sf3b3)
Complex C
U2 SnRNP specific factors
406824 (sf3b3)
Chromosome and associated proteins [BR:dre03036]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
406824 (sf3b3)
TFTC complex
406824 (sf3b3)
|
SSDB |
|
Motif |
|
Other DBs |
|
LinkDB |
|
Position |
18:complement(19937260..19970154)
|
AA seq |
1217 aa
MFLYNITLQRATGISHAIHGNFSGTKQQEIVVSRGKILELLRPDANTGKVHTLLTMEVFG
VVRSLMAFRLTGGTKDYVVVGSDSGRIVILEYHPSKNMFEKIHQETFGKSGCRRIVPGQF
LAVDPKGRAVMMGATEKQKLVYILNRDAAARLTISSPLEAHKANTLVYHVVGVDVGFENP
MFACLEMDYEEADNDPTGEAAANTQQTLTFYELDLGLNHVVRKYSEALEEHGNFLITVPG
GSDGPSGVLICSENYITYKNFGDQPDIRCPIPRRRNDLDDPERGMIFVCSATHKTKSMFF
FLAQTEQGDIFKVTLETDEEMVTEIRMKYFDTIPVATAMCVLKTGFLFVSSEFGNHYLYQ
IAHLGDDDEEPEFSSAMPLEEGDTFFFQPRPLKNLVLVDEQESLSPIMSCQIADLANEDT
PQLYVACGRGPGSTLRVLRHGLEVSEMAVSELPGNPNAVWTVRRHVEDEFDAYIIVSFVN
ATLVLSIGETVEEVTDSGFLGTTPTLSCSLLGEDALVQVYPDGIRHIRADKRVNEWKTPG
KKTIIRCAVNQRQVVIALTGGELVYFEMDPSGQLNEYTERKEMSADVVCMSLANVPPGEQ
RSRFLAVGLVDNTVRIISLDPSDCLQPLSMQALPAQPESLCIVEMGGVEKQDELGEKGTI
CFLYLNIGLQNGVLLRTVLDPVTGDLSDTRTRYLGSRPVKLFRVRMQGQEAVLAMSSRSW
LSYSYQSRFHLTPLSYETLEYASGFASEQCPEGIVAISTNTLRILALEKLGAVFNQVAFP
LQYTPRKFVIHPETNNLILIETDHNAYTEATKAQRKQQMAEEMVEAAGEDERELAAEMAA
AFLNENLPEAIFGAPKAGSGQWASLVRLINPIQGNTLDLVQLEQNEAAFSVAICRFLNGG
DDWYVLVGVARDMILNPRSVGGGYIYTYRIVGGGDKLEFLHKTPVEDVPLAIAPFQGRVL
VGVGKLLRIYDLGKKKLLRKCENKHVPNLVTGIHTIGQRVIVSDVQESLFWVRYRRNENQ
LIIFADDTYPRWITTACLLDYDTMASADKFGNICVVRLPPNTSDDVDEDPTGNKALWDRG
LLNGASQKAEIIINYHIGETVLSLQKTTLIPGGSESLVYTTLSGGIGILVPFTSHEDHDF
FQHLEMHMRSEFPPLCGRDHLSFRSYYFPVKNVIDGDLCEQFNSMDPHKQKSVSEELDRT
PPEVSKKLEDIRTRYAF |
NT seq |
3654 nt +upstreamnt +downstreamnt
atgtttttgtacaacatcaccctgcaaagggcaactggcatctcacatgccatccatgga
aacttctcaggaaccaagcagcaggagattgttgtttctcgaggaaaaattctggagctg
ctgcgtcctgatgccaacaccgggaaagttcacacactgctcactatggaggtgtttggt
gtcgtccgctcactcatggccttcaggttgacgggtggaactaaagactacgttgtggtg
ggcagtgactctggtcgtattgtgatcctggagtaccatccttccaagaacatgtttgaa
aagatccaccaggagacctttggcaagagtggctgcagacgcattgtgcctgggcagttt
cttgctgttgatcctaagggaagagctgtaatgataggtgccacagagaaacagaagttg
gtttacatcctgaatagagatgcagcagctcgccttaccatctcctcccctctagaggct
cacaaggctaatacacttgtctaccatgtggttggtgtggacgtgggctttgagaacccc
atgtttgcctgcctggagatggactatgaggaagcagataatgatcccactggagaagca
gcagcaaacacacagcagactttgaccttctatgagttggacttgggtctcaaccatgtg
gttcgcaagtacagcgaggctctggaggaacatggcaacttcctcatcacagttcccggt
ggttcggatggtcccagtggtgtgctcatttgttctgagaattatatcacctacaaaaat
ttcggtgaccagccagacatccgttgcccaatcccacgcaggagaaatgacctggatgac
cctgagcgaggcatgatctttgtctgctctgccacccacaagaccaaatctatgtttttc
tttttagcccagactgaacagggcgacatctttaaggttacactggaaaccgatgaggaa
atggtgacagagattaggatgaaatattttgacaccatcccagtggccacagcaatgtgt
gttctgaagactggattcttatttgtatcttcagagtttggaaaccactacctgtatcag
attgcccacttgggtgatgatgatgaagaaccagagttttcttctgccatgcctttggag
gagggagacaccttctttttccaacctcgtccccttaaaaacctagtgctggtggacgag
caagaaagtctttcacccatcatgtcctgccagattgcggatttggctaatgaagacacc
ccgcagctgtatgtggcgtgtggcagaggacccagatctacattgagggttttgagacac
ggactggaggtgtcggaaatggctgtttcagaactccctggtaaccccaatgctgtgtgg
accgtcagaagacatgttgaagatgagtttgatgcctacatcattgtctccttcgtcaat
gccaccctggtactatcgattggtgagactgtggaggaagtgacagattctggtttcttg
ggaacaacacccaccctgtcctgctcgttgcttggggaagatgcacttgttcaagtgtac
cctgatggaatccgtcacatccgcgcggataaaagagtgaatgaatggaagactccggga
aagaaaacaatcattcgatgtgctgtcaatcagagacaggtggtgattgctttgactggc
ggagaactggtctactttgagatggatccgtctggacagctgaatgaatacacagagagg
aaggagatgtctgctgatgttgtgtgcatgagtttggcaaatgtgccccctggtgagcag
cgttcccgtttcctggctgttggtttggtggacaataccgtccgcatcatctctctggat
ccatccgactgtttgcagccattaagtatgcaggctcttccagcccagccagagtctctt
tgtattgtggagatgggtggagtggaaaaacaggatgagctgggagaaaagggcaccatt
ggcttcttgtaccttaatattggcctgcagaacggagtgttattgcgtactgtgttggat
ccagtaactggggacctgtctgatactcgaactcggtatctcggctctcgtcctgtcaag
ctttttagagtccggatgcagggccaagaagctgttctggccatgtccagtcgttcctgg
ctgagttactcataccagtctcgattccacttgacgccactgtcatacgaaaccttggag
tatgcttcaggctttgcttcagagcagtgtcctgagggtatcgttgccatttccaccaac
acactgaggattttggctcttgagaaactgggtgccgtcttcaaccaggttgctttccca
ctgcagtacacgcctcgcaagtttgtcatccacccagagaccaacaacctgatcctgatc
gaaaccgaccacaatgcctacactgaagccaccaaagcccagcgcaagcagcagatggct
gaggaaatggtggaggcagcaggagaggatgaaagggagctggcagcagaaatggcagca
gctttcttgaatgagaatctgccagaagccatctttggggcacctaaagcaggctctggg
caatgggcctcacttgtacgcttgatcaaccccatccagggcaacacattggacctggtg
cagctggagcagaatgaggcagctttcagtgtggctatttgccgctttctgaatggagga
gatgactggtacgtgttggtgggtgttgcaagagatatgatactcaatccacgctctgtt
ggcggaggatatatttatacctatcggatagttggaggtggggacaagctggagtttttg
cacaagacccctgtggaggacgtgcccctggctattgctccatttcagggacgggttttg
gttggagtgggcaagctcttgcgcatctatgatttgggaaagaaaaaacttctccgcaag
tgtgaaaacaagcatgttcctaatttagtgacaggcatccacactatcggccagcgtgtg
attgtttcagatgttcaggagagtctgttctgggtgcgctatcgccgcaatgagaaccaa
ctcatcatctttgctgacgatacttatcctcggtggatcaccactgcctgtctgcttgat
tatgacacaatggcttcagcggataagtttggaaatatctgcgttgttcgccttccccca
aacaccagcgatgatgttgatgaggaccccacagggaacaaagcattgtgggacagaggc
ttgcttaacggagcttcacagaaggctgagatcatcatcaactatcacataggagagact
gtgctgtcgctccagaaaaccacactcatccctggaggatccgagtctctggtgtacacc
acactatctggaggcattggcatccttgttcccttcacctctcatgaggatcacgatttc
ttccagcacttggaaatgcacatgcgctcagagtttcctcctctgtgtggtcgagatcat
ctcagcttccgctcatactatttccctgtcaagaatgtgattgacggagacctgtgtgag
cagtttaactctatggatcctcataagcagaagagtgtctctgaggagttggaccgtaca
cctccagaagtgtcaaagaaactggaagacatccgaacacgctatgccttctag |