KEGG   Danio rerio (zebrafish): 406824
Entry
406824            CDS       T01004                                 
Symbol
sf3b3
Name
(RefSeq) splicing factor 3B subunit 3
  KO
K12830  splicing factor 3B subunit 3
Organism
dre  Danio rerio (zebrafish)
Pathway
dre03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:dre00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    406824 (sf3b3)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:dre03021]
    406824 (sf3b3)
   03041 Spliceosome [BR:dre03041]
    406824 (sf3b3)
   03036 Chromosome and associated proteins [BR:dre03036]
    406824 (sf3b3)
Transcription machinery [BR:dre03021]
 Eukaryotic type
  RNA polymerase II system
   Coactivators
    SAGA/TFTC/STAGA complex
     406824 (sf3b3)
Spliceosome [BR:dre03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    406824 (sf3b3)
 Complex B
    406824 (sf3b3)
 Complex C
   U2 SnRNP specific factors
    406824 (sf3b3)
Chromosome and associated proteins [BR:dre03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    STAGA complex
     406824 (sf3b3)
    TFTC complex
     406824 (sf3b3)
SSDB
Motif
Pfam: Beta-prop_RSE1_1st Beta-prop_RSE1_2nd CPSF_A
Other DBs
NCBI-GeneID: 406824
NCBI-ProteinID: NP_998668
ZFIN: ZDB-GENE-040426-2901
Ensembl: ENSDARG00000103553
UniProt: Q1LVE8
LinkDB
Position
18:complement(19937260..19970154)
AA seq 1217 aa
MFLYNITLQRATGISHAIHGNFSGTKQQEIVVSRGKILELLRPDANTGKVHTLLTMEVFG
VVRSLMAFRLTGGTKDYVVVGSDSGRIVILEYHPSKNMFEKIHQETFGKSGCRRIVPGQF
LAVDPKGRAVMMGATEKQKLVYILNRDAAARLTISSPLEAHKANTLVYHVVGVDVGFENP
MFACLEMDYEEADNDPTGEAAANTQQTLTFYELDLGLNHVVRKYSEALEEHGNFLITVPG
GSDGPSGVLICSENYITYKNFGDQPDIRCPIPRRRNDLDDPERGMIFVCSATHKTKSMFF
FLAQTEQGDIFKVTLETDEEMVTEIRMKYFDTIPVATAMCVLKTGFLFVSSEFGNHYLYQ
IAHLGDDDEEPEFSSAMPLEEGDTFFFQPRPLKNLVLVDEQESLSPIMSCQIADLANEDT
PQLYVACGRGPGSTLRVLRHGLEVSEMAVSELPGNPNAVWTVRRHVEDEFDAYIIVSFVN
ATLVLSIGETVEEVTDSGFLGTTPTLSCSLLGEDALVQVYPDGIRHIRADKRVNEWKTPG
KKTIIRCAVNQRQVVIALTGGELVYFEMDPSGQLNEYTERKEMSADVVCMSLANVPPGEQ
RSRFLAVGLVDNTVRIISLDPSDCLQPLSMQALPAQPESLCIVEMGGVEKQDELGEKGTI
CFLYLNIGLQNGVLLRTVLDPVTGDLSDTRTRYLGSRPVKLFRVRMQGQEAVLAMSSRSW
LSYSYQSRFHLTPLSYETLEYASGFASEQCPEGIVAISTNTLRILALEKLGAVFNQVAFP
LQYTPRKFVIHPETNNLILIETDHNAYTEATKAQRKQQMAEEMVEAAGEDERELAAEMAA
AFLNENLPEAIFGAPKAGSGQWASLVRLINPIQGNTLDLVQLEQNEAAFSVAICRFLNGG
DDWYVLVGVARDMILNPRSVGGGYIYTYRIVGGGDKLEFLHKTPVEDVPLAIAPFQGRVL
VGVGKLLRIYDLGKKKLLRKCENKHVPNLVTGIHTIGQRVIVSDVQESLFWVRYRRNENQ
LIIFADDTYPRWITTACLLDYDTMASADKFGNICVVRLPPNTSDDVDEDPTGNKALWDRG
LLNGASQKAEIIINYHIGETVLSLQKTTLIPGGSESLVYTTLSGGIGILVPFTSHEDHDF
FQHLEMHMRSEFPPLCGRDHLSFRSYYFPVKNVIDGDLCEQFNSMDPHKQKSVSEELDRT
PPEVSKKLEDIRTRYAF
NT seq 3654 nt   +upstreamnt  +downstreamnt
atgtttttgtacaacatcaccctgcaaagggcaactggcatctcacatgccatccatgga
aacttctcaggaaccaagcagcaggagattgttgtttctcgaggaaaaattctggagctg
ctgcgtcctgatgccaacaccgggaaagttcacacactgctcactatggaggtgtttggt
gtcgtccgctcactcatggccttcaggttgacgggtggaactaaagactacgttgtggtg
ggcagtgactctggtcgtattgtgatcctggagtaccatccttccaagaacatgtttgaa
aagatccaccaggagacctttggcaagagtggctgcagacgcattgtgcctgggcagttt
cttgctgttgatcctaagggaagagctgtaatgataggtgccacagagaaacagaagttg
gtttacatcctgaatagagatgcagcagctcgccttaccatctcctcccctctagaggct
cacaaggctaatacacttgtctaccatgtggttggtgtggacgtgggctttgagaacccc
atgtttgcctgcctggagatggactatgaggaagcagataatgatcccactggagaagca
gcagcaaacacacagcagactttgaccttctatgagttggacttgggtctcaaccatgtg
gttcgcaagtacagcgaggctctggaggaacatggcaacttcctcatcacagttcccggt
ggttcggatggtcccagtggtgtgctcatttgttctgagaattatatcacctacaaaaat
ttcggtgaccagccagacatccgttgcccaatcccacgcaggagaaatgacctggatgac
cctgagcgaggcatgatctttgtctgctctgccacccacaagaccaaatctatgtttttc
tttttagcccagactgaacagggcgacatctttaaggttacactggaaaccgatgaggaa
atggtgacagagattaggatgaaatattttgacaccatcccagtggccacagcaatgtgt
gttctgaagactggattcttatttgtatcttcagagtttggaaaccactacctgtatcag
attgcccacttgggtgatgatgatgaagaaccagagttttcttctgccatgcctttggag
gagggagacaccttctttttccaacctcgtccccttaaaaacctagtgctggtggacgag
caagaaagtctttcacccatcatgtcctgccagattgcggatttggctaatgaagacacc
ccgcagctgtatgtggcgtgtggcagaggacccagatctacattgagggttttgagacac
ggactggaggtgtcggaaatggctgtttcagaactccctggtaaccccaatgctgtgtgg
accgtcagaagacatgttgaagatgagtttgatgcctacatcattgtctccttcgtcaat
gccaccctggtactatcgattggtgagactgtggaggaagtgacagattctggtttcttg
ggaacaacacccaccctgtcctgctcgttgcttggggaagatgcacttgttcaagtgtac
cctgatggaatccgtcacatccgcgcggataaaagagtgaatgaatggaagactccggga
aagaaaacaatcattcgatgtgctgtcaatcagagacaggtggtgattgctttgactggc
ggagaactggtctactttgagatggatccgtctggacagctgaatgaatacacagagagg
aaggagatgtctgctgatgttgtgtgcatgagtttggcaaatgtgccccctggtgagcag
cgttcccgtttcctggctgttggtttggtggacaataccgtccgcatcatctctctggat
ccatccgactgtttgcagccattaagtatgcaggctcttccagcccagccagagtctctt
tgtattgtggagatgggtggagtggaaaaacaggatgagctgggagaaaagggcaccatt
ggcttcttgtaccttaatattggcctgcagaacggagtgttattgcgtactgtgttggat
ccagtaactggggacctgtctgatactcgaactcggtatctcggctctcgtcctgtcaag
ctttttagagtccggatgcagggccaagaagctgttctggccatgtccagtcgttcctgg
ctgagttactcataccagtctcgattccacttgacgccactgtcatacgaaaccttggag
tatgcttcaggctttgcttcagagcagtgtcctgagggtatcgttgccatttccaccaac
acactgaggattttggctcttgagaaactgggtgccgtcttcaaccaggttgctttccca
ctgcagtacacgcctcgcaagtttgtcatccacccagagaccaacaacctgatcctgatc
gaaaccgaccacaatgcctacactgaagccaccaaagcccagcgcaagcagcagatggct
gaggaaatggtggaggcagcaggagaggatgaaagggagctggcagcagaaatggcagca
gctttcttgaatgagaatctgccagaagccatctttggggcacctaaagcaggctctggg
caatgggcctcacttgtacgcttgatcaaccccatccagggcaacacattggacctggtg
cagctggagcagaatgaggcagctttcagtgtggctatttgccgctttctgaatggagga
gatgactggtacgtgttggtgggtgttgcaagagatatgatactcaatccacgctctgtt
ggcggaggatatatttatacctatcggatagttggaggtggggacaagctggagtttttg
cacaagacccctgtggaggacgtgcccctggctattgctccatttcagggacgggttttg
gttggagtgggcaagctcttgcgcatctatgatttgggaaagaaaaaacttctccgcaag
tgtgaaaacaagcatgttcctaatttagtgacaggcatccacactatcggccagcgtgtg
attgtttcagatgttcaggagagtctgttctgggtgcgctatcgccgcaatgagaaccaa
ctcatcatctttgctgacgatacttatcctcggtggatcaccactgcctgtctgcttgat
tatgacacaatggcttcagcggataagtttggaaatatctgcgttgttcgccttccccca
aacaccagcgatgatgttgatgaggaccccacagggaacaaagcattgtgggacagaggc
ttgcttaacggagcttcacagaaggctgagatcatcatcaactatcacataggagagact
gtgctgtcgctccagaaaaccacactcatccctggaggatccgagtctctggtgtacacc
acactatctggaggcattggcatccttgttcccttcacctctcatgaggatcacgatttc
ttccagcacttggaaatgcacatgcgctcagagtttcctcctctgtgtggtcgagatcat
ctcagcttccgctcatactatttccctgtcaagaatgtgattgacggagacctgtgtgag
cagtttaactctatggatcctcataagcagaagagtgtctctgaggagttggaccgtaca
cctccagaagtgtcaaagaaactggaagacatccgaacacgctatgccttctag

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