Danio rerio (zebrafish): 406824
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Entry
406824 CDS
T01004
Symbol
sf3b3
Name
(RefSeq) splicing factor 3B subunit 3
KO
K12830
splicing factor 3B subunit 3
Organism
dre
Danio rerio (zebrafish)
Pathway
dre03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
406824 (sf3b3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dre03021
]
406824 (sf3b3)
03041 Spliceosome [BR:
dre03041
]
406824 (sf3b3)
03036 Chromosome and associated proteins [BR:
dre03036
]
406824 (sf3b3)
Transcription machinery [BR:
dre03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
406824 (sf3b3)
Spliceosome [BR:
dre03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
406824 (sf3b3)
Complex B
406824 (sf3b3)
Complex C
U2 SnRNP specific factors
406824 (sf3b3)
Chromosome and associated proteins [BR:
dre03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
406824 (sf3b3)
TFTC complex
406824 (sf3b3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Motif
Other DBs
NCBI-GeneID:
406824
NCBI-ProteinID:
NP_998668
ZFIN:
ZDB-GENE-040426-2901
Ensembl:
ENSDARG00000103553
UniProt:
Q1LVE8
LinkDB
All DBs
Position
18:complement(19937260..19970154)
Genome browser
AA seq
1217 aa
AA seq
DB search
MFLYNITLQRATGISHAIHGNFSGTKQQEIVVSRGKILELLRPDANTGKVHTLLTMEVFG
VVRSLMAFRLTGGTKDYVVVGSDSGRIVILEYHPSKNMFEKIHQETFGKSGCRRIVPGQF
LAVDPKGRAVMMGATEKQKLVYILNRDAAARLTISSPLEAHKANTLVYHVVGVDVGFENP
MFACLEMDYEEADNDPTGEAAANTQQTLTFYELDLGLNHVVRKYSEALEEHGNFLITVPG
GSDGPSGVLICSENYITYKNFGDQPDIRCPIPRRRNDLDDPERGMIFVCSATHKTKSMFF
FLAQTEQGDIFKVTLETDEEMVTEIRMKYFDTIPVATAMCVLKTGFLFVSSEFGNHYLYQ
IAHLGDDDEEPEFSSAMPLEEGDTFFFQPRPLKNLVLVDEQESLSPIMSCQIADLANEDT
PQLYVACGRGPGSTLRVLRHGLEVSEMAVSELPGNPNAVWTVRRHVEDEFDAYIIVSFVN
ATLVLSIGETVEEVTDSGFLGTTPTLSCSLLGEDALVQVYPDGIRHIRADKRVNEWKTPG
KKTIIRCAVNQRQVVIALTGGELVYFEMDPSGQLNEYTERKEMSADVVCMSLANVPPGEQ
RSRFLAVGLVDNTVRIISLDPSDCLQPLSMQALPAQPESLCIVEMGGVEKQDELGEKGTI
CFLYLNIGLQNGVLLRTVLDPVTGDLSDTRTRYLGSRPVKLFRVRMQGQEAVLAMSSRSW
LSYSYQSRFHLTPLSYETLEYASGFASEQCPEGIVAISTNTLRILALEKLGAVFNQVAFP
LQYTPRKFVIHPETNNLILIETDHNAYTEATKAQRKQQMAEEMVEAAGEDERELAAEMAA
AFLNENLPEAIFGAPKAGSGQWASLVRLINPIQGNTLDLVQLEQNEAAFSVAICRFLNGG
DDWYVLVGVARDMILNPRSVGGGYIYTYRIVGGGDKLEFLHKTPVEDVPLAIAPFQGRVL
VGVGKLLRIYDLGKKKLLRKCENKHVPNLVTGIHTIGQRVIVSDVQESLFWVRYRRNENQ
LIIFADDTYPRWITTACLLDYDTMASADKFGNICVVRLPPNTSDDVDEDPTGNKALWDRG
LLNGASQKAEIIINYHIGETVLSLQKTTLIPGGSESLVYTTLSGGIGILVPFTSHEDHDF
FQHLEMHMRSEFPPLCGRDHLSFRSYYFPVKNVIDGDLCEQFNSMDPHKQKSVSEELDRT
PPEVSKKLEDIRTRYAF
NT seq
3654 nt
NT seq
+upstream
nt +downstream
nt
atgtttttgtacaacatcaccctgcaaagggcaactggcatctcacatgccatccatgga
aacttctcaggaaccaagcagcaggagattgttgtttctcgaggaaaaattctggagctg
ctgcgtcctgatgccaacaccgggaaagttcacacactgctcactatggaggtgtttggt
gtcgtccgctcactcatggccttcaggttgacgggtggaactaaagactacgttgtggtg
ggcagtgactctggtcgtattgtgatcctggagtaccatccttccaagaacatgtttgaa
aagatccaccaggagacctttggcaagagtggctgcagacgcattgtgcctgggcagttt
cttgctgttgatcctaagggaagagctgtaatgataggtgccacagagaaacagaagttg
gtttacatcctgaatagagatgcagcagctcgccttaccatctcctcccctctagaggct
cacaaggctaatacacttgtctaccatgtggttggtgtggacgtgggctttgagaacccc
atgtttgcctgcctggagatggactatgaggaagcagataatgatcccactggagaagca
gcagcaaacacacagcagactttgaccttctatgagttggacttgggtctcaaccatgtg
gttcgcaagtacagcgaggctctggaggaacatggcaacttcctcatcacagttcccggt
ggttcggatggtcccagtggtgtgctcatttgttctgagaattatatcacctacaaaaat
ttcggtgaccagccagacatccgttgcccaatcccacgcaggagaaatgacctggatgac
cctgagcgaggcatgatctttgtctgctctgccacccacaagaccaaatctatgtttttc
tttttagcccagactgaacagggcgacatctttaaggttacactggaaaccgatgaggaa
atggtgacagagattaggatgaaatattttgacaccatcccagtggccacagcaatgtgt
gttctgaagactggattcttatttgtatcttcagagtttggaaaccactacctgtatcag
attgcccacttgggtgatgatgatgaagaaccagagttttcttctgccatgcctttggag
gagggagacaccttctttttccaacctcgtccccttaaaaacctagtgctggtggacgag
caagaaagtctttcacccatcatgtcctgccagattgcggatttggctaatgaagacacc
ccgcagctgtatgtggcgtgtggcagaggacccagatctacattgagggttttgagacac
ggactggaggtgtcggaaatggctgtttcagaactccctggtaaccccaatgctgtgtgg
accgtcagaagacatgttgaagatgagtttgatgcctacatcattgtctccttcgtcaat
gccaccctggtactatcgattggtgagactgtggaggaagtgacagattctggtttcttg
ggaacaacacccaccctgtcctgctcgttgcttggggaagatgcacttgttcaagtgtac
cctgatggaatccgtcacatccgcgcggataaaagagtgaatgaatggaagactccggga
aagaaaacaatcattcgatgtgctgtcaatcagagacaggtggtgattgctttgactggc
ggagaactggtctactttgagatggatccgtctggacagctgaatgaatacacagagagg
aaggagatgtctgctgatgttgtgtgcatgagtttggcaaatgtgccccctggtgagcag
cgttcccgtttcctggctgttggtttggtggacaataccgtccgcatcatctctctggat
ccatccgactgtttgcagccattaagtatgcaggctcttccagcccagccagagtctctt
tgtattgtggagatgggtggagtggaaaaacaggatgagctgggagaaaagggcaccatt
ggcttcttgtaccttaatattggcctgcagaacggagtgttattgcgtactgtgttggat
ccagtaactggggacctgtctgatactcgaactcggtatctcggctctcgtcctgtcaag
ctttttagagtccggatgcagggccaagaagctgttctggccatgtccagtcgttcctgg
ctgagttactcataccagtctcgattccacttgacgccactgtcatacgaaaccttggag
tatgcttcaggctttgcttcagagcagtgtcctgagggtatcgttgccatttccaccaac
acactgaggattttggctcttgagaaactgggtgccgtcttcaaccaggttgctttccca
ctgcagtacacgcctcgcaagtttgtcatccacccagagaccaacaacctgatcctgatc
gaaaccgaccacaatgcctacactgaagccaccaaagcccagcgcaagcagcagatggct
gaggaaatggtggaggcagcaggagaggatgaaagggagctggcagcagaaatggcagca
gctttcttgaatgagaatctgccagaagccatctttggggcacctaaagcaggctctggg
caatgggcctcacttgtacgcttgatcaaccccatccagggcaacacattggacctggtg
cagctggagcagaatgaggcagctttcagtgtggctatttgccgctttctgaatggagga
gatgactggtacgtgttggtgggtgttgcaagagatatgatactcaatccacgctctgtt
ggcggaggatatatttatacctatcggatagttggaggtggggacaagctggagtttttg
cacaagacccctgtggaggacgtgcccctggctattgctccatttcagggacgggttttg
gttggagtgggcaagctcttgcgcatctatgatttgggaaagaaaaaacttctccgcaag
tgtgaaaacaagcatgttcctaatttagtgacaggcatccacactatcggccagcgtgtg
attgtttcagatgttcaggagagtctgttctgggtgcgctatcgccgcaatgagaaccaa
ctcatcatctttgctgacgatacttatcctcggtggatcaccactgcctgtctgcttgat
tatgacacaatggcttcagcggataagtttggaaatatctgcgttgttcgccttccccca
aacaccagcgatgatgttgatgaggaccccacagggaacaaagcattgtgggacagaggc
ttgcttaacggagcttcacagaaggctgagatcatcatcaactatcacataggagagact
gtgctgtcgctccagaaaaccacactcatccctggaggatccgagtctctggtgtacacc
acactatctggaggcattggcatccttgttcccttcacctctcatgaggatcacgatttc
ttccagcacttggaaatgcacatgcgctcagagtttcctcctctgtgtggtcgagatcat
ctcagcttccgctcatactatttccctgtcaagaatgtgattgacggagacctgtgtgag
cagtttaactctatggatcctcataagcagaagagtgtctctgaggagttggaccgtaca
cctccagaagtgtcaaagaaactggaagacatccgaacacgctatgccttctag
DBGET
integrated database retrieval system
