Danio rerio (zebrafish): 406845
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Entry
406845 CDS
T01004
Symbol
msh2
Name
(RefSeq) DNA mismatch repair protein Msh2
KO
K08735
DNA mismatch repair protein MSH2
Organism
dre
Danio rerio (zebrafish)
Pathway
dre03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
406845 (msh2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dre03400
]
406845 (msh2)
DNA repair and recombination proteins [BR:
dre03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
406845 (msh2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_I
MutS_II
Motif
Other DBs
NCBI-GeneID:
406845
NCBI-ProteinID:
NP_998689
ZFIN:
ZDB-GENE-040426-2932
Ensembl:
ENSDARG00000018022
UniProt:
Q803R6
LinkDB
All DBs
Position
12:complement(26689995..26712378)
Genome browser
AA seq
936 aa
AA seq
DB search
MAVQPKQNLSMDSASEHGFLNFYFSMSDKPDTTVRVFDRNDYYTVHGKDAIFAAKEVFKT
NGVIKNLGSGNRRLESVVLSKMNFESFVRDLLLVRQYRVEVYKNASKSSKEHDWQIAFKA
SPGNLTQFEEILFGSGGGPAEGAVGVVGVRLGTGTDGQRVVGVGYVDSTLRKLGVCEFPD
NDQFSNLEALLVQIGPKECVLPAGDSGGDQGKLKQVVQRGGILLTDRKKSEFTTKDIVQD
LNRLLKARKGETVSSAALPEMEKKIAMSCLEAVIKYLELLADEANFGSFKMTTFDLNQYM
RLDNAAVQALNLFQGSSDDATGTHSLAGLLNKCRTPQGQRLVNQWIKQPLIDKNKIEERL
DLVETFVEDSELRKSCQEDLLRRFPDLNRMAKKFQRQSSNLQDCYRVYQSVGQLPNVVLA
LERYSGKHQVLLHAAFISPLNDLISDFSKFQEMIETTLDMNQVEHHEFLVKPSFDPTLSD
LRENMDRLEKAMQAALSSAARELGLEAAKTVKLESNAQIGYFFRVTCKEEKSLRNNKKFT
TLDVQKNGVRFTNSKLSSLNEEYTKSREEYEEAQNAIVKEIISIAAGYVDPVQTLNEVIA
QLDAVLSFAVVSHAAPVPFIRPKILEKGSGRLVLKAARHPCVEAQDEVAFIPNDVTFIRG
EKMFHIITGPSMGGKSTYIRQVGVIVLMAQIGCFVPCDEAELSVVDCVLARVGAGDSQIK
GVSTFMAEMLETAAILRSATEDSLITIDELGRGTSTYDGFGLAWAISEYIATRLKSFCLF
ATHFHELTALAQQVPTVRNLHVTALTTDSTLTMLYKVKKGVCDQSFGIHVAELASFPKHV
IANAREKALELEEFQDISSVGEEAGPKAKKRCMEKQEGERIIEAFLAKVKSMPVDGMSDK
AVKEELRKLKAEVISQNNSFVNEIVSRSGKVKLSSA
NT seq
2811 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgcaacctaaacagaatctgtctatggacagcgcgtctgaacatggattcctc
aatttttacttttcgatgtccgacaaaccagacaccacggtgcgagtgtttgatagaaac
gattactatactgtgcacgggaaagatgcgatttttgcagctaaagaggttttcaagact
aatggagtcatcaaaaatctgggttcagggaacaggaggttggaaagtgtggtcctcagt
aagatgaactttgagtcatttgtgagggatttgctgctggttagacaataccgggtggag
gtttacaagaacgccagtaagagcagcaaagagcatgactggcaaatcgctttcaaggca
tctccaggaaaccttactcagtttgaggagattctgtttggcagtggcggagggcctgct
gagggtgctgtcggtgtggtgggtgttcgtcttggcactggcactgatggccagcgtgtt
gtcggtgttggttatgtggacagtaccctcaggaaacttggtgtgtgcgagttccctgat
aacgatcagttctccaacctggaggctctacttgtgcaaatcggccccaaagagtgtgtg
cttcctgcaggagattcaggaggagacctgggcaaacttaaacaggtggtgcagcgtggt
ggcattctcctcacagacaggaagaagtcagagttcacaactaaagacattgtgcaggat
ctgaatcggctactgaaggcccgtaaaggagagactgtgtccagcgctgccctgcctgag
atggagaaaaagattgcaatgtcttgcttagaagcagtcatcaaatacctggagcttctc
gcagatgaggccaattttgggtctttcaagatgaccacctttgacctcaaccagtacatg
cgcctggataatgctgctgtacaggctctcaatctctttcagggttcctctgatgatgct
acaggcactcactctctggctggacttttgaacaaatgtcggactccacaaggacagcga
ctggtcaaccaatggatcaaacagcctctcattgacaaaaacaagatagaagaaagactg
gaccttgtggagacatttgtggaggactcggagctaaggaaaagttgtcaagaggatcta
cttcgtcgctttcctgacttaaatcggatggcaaagaagttccagcgtcagagctccaat
ttacaggactgttaccgggtctatcaatctgtggggcaactgcccaatgtggtgctggca
ctggagagatacagtggaaaacatcaggtcctcctgcatgcagcattcatctctccacta
aacgacctcatctcagacttctccaaatttcaggagatgattgaaaccacactggacatg
aaccaggttgagcatcacgagtttctggtgaaaccttcctttgatccaactttgagtgat
ctcagggaaaacatggatcgtttggagaaagccatgcaggctgccttgagcagcgcagct
cgggagcttgggttggaagcagccaagactgtgaagcttgaatccaatgcacaaattggt
tattttttccgagttacgtgcaaagaagaaaagagtcttcgcaacaacaagaaattcact
actttagacgttcagaagaatggagtacggttcactaatagtaagcttagctcgttgaat
gaagaatacacaaaaagcagagaagagtatgaagaggctcagaatgccatcgtcaaggaa
atcatcagcattgctgcaggttatgtggatccagtacagactctgaatgaggtgatcgct
cagctggatgcagtggtaagcttcgctgtggtgtcacatgctgccccagtgcctttcata
agaccaaaaatactagagaagggttcaggcagactcgttctgaaggcagcaagacatccc
tgtgttgaagcccaggatgaagtggctttcattcccaatgatgtcaccttcataagagga
gagaagatgtttcatatcatcacaggtccaaatatgggtggtaaatctacctacatccgt
caagtgggtgtgattgtgctgatggcacagataggctgttttgtgccatgtgatgaggca
gagctgagcgtggtggactgtgttcttgctcgagtaggtgcgggtgacagccagattaaa
ggagtgtccacttttatggctgagatgctggagacagcagctattcttcggtcagccagt
gaggattctctcattattattgatgaattgggcagaggcacatccacatatgatggcttt
ggtctggcctgggcgatctcagagtatatcgccacccgcctcaagtccttctgcctgttc
gcaactcacttccatgagctgacggcgctggcacagcaggtgcccactgtccgcaacctc
catgtcaccgcgctgaccacagacagcactcttaccatgctctacaaggtcaaaaagggt
gtgtgtgaccagagctttgggattcatgtggcggagcttgctagcttccccaaacatgta
attgcaaatgcgcgggagaaggctttggagcttgaagaatttcaagacatctccagtgtt
ggggaggaagcaggacccaaagccaagaaacgctgcatggagaaacaggagggagagaag
atcattgaggcttttctggctaaggttaaatcaatgcctgttgatgggatgtctgacaag
gctgtcaaagaggagctgcgcaaactcaaggcagaggtcatcagccaaaacaatagcttc
gtcaatgagatagtgtcacgctctggcaaggtcaaactcagttcagcctga
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