Danio rerio (zebrafish): 415104
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Entry
415104 CDS
T01004
Symbol
ctcF
Name
(RefSeq) transcriptional repressor CTCF isoform X1
KO
K23195
transcriptional repressor CTCF
Organism
dre
Danio rerio (zebrafish)
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
dre03000
]
415104 (ctcF)
03036 Chromosome and associated proteins [BR:
dre03036
]
415104 (ctcF)
Transcription factors [BR:
dre03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
415104 (ctcF)
Chromosome and associated proteins [BR:
dre03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
415104 (ctcF)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-H2C2_2
zf-C2H2
zf-C2H2_4
zf-C2H2_16
zf-H2C2_5
zf-C2H2_jaz
zf-C2H2_REST
Zf-C2H2_ZNF451_C
zf-C2H2_7th_ZNF462
zf-C2H2_ZN142
Roughex
zf-met
zf-C2HE
Zf-C2H2_ZNF451
zf-C2H2_6
zf-C2H2_15
Motif
Other DBs
NCBI-GeneID:
415104
NCBI-ProteinID:
XP_068070854
ZFIN:
ZDB-GENE-040624-5
Ensembl:
ENSDARG00000056621
UniProt:
A0AB32T4N5
LinkDB
All DBs
Position
18:23676525..23683897
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AA seq
809 aa
AA seq
DB search
MKCSILVQVLPMEGGPTEAVVEDAGDAFKAKECKTYQRRREDEEVGAELLQAAVIEQAQA
EVEPVVEAQQQLVESVVSVNSSVDMMMMETLDPALLQMKTEVMEAAVGAPVAVAGAAHEA
TVTTVDDTQIITLQVVNMEEQQLGLGELQLVQVPVSAVPVTAATVEELQGTLVDATAMPK
DGEPVICHTLPLPEGFQVVKVGANGEVETVEQDELQPQDDQPPHQEEEEEMAEPQNEDPA
WSKDPDYTPPVKKVKKTKKSKLRYNTEGDKDMDVSVYDFEEEQQEGLLSEVNAEKVVGNM
KPPKPTKIKKKGVKKTFQCELCSYTCPRRSNLDRHMKSHTDERPHKCHLCGRAFRTVTLL
RNHLNTHTGTRPHKCTDCDMAFVTSGELVRHRRYKHTHEKPFKCSMCDYASVEVSKLKRH
IRSHTGERPFQCSLCSYASRDTYKLKRHMRTHSGEKPYECYICHARFTQSGTMKMHILQK
HTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYIEQGRKCRYCDAVFHERYALIQHQKSH
KNEKRFKCDQCDYACRQERHMVMHKRTHTGEKPYACSQCEKTFRQKQLLDMHFRRYHDPN
FVPTSFVCTKCGKTFTRRNTMARHAENCTGMDSADGENGTPPKRGRGGRKRKMRSRKDDD
DDDDSDEHGEPDLDDIDEEDEDDLLDEDQMGLLDQAPPSVPIPAPAEPPIKRKRGRPPKN
APKVSPTKSITKTTTAAAIIQVEDESTGAIENIIVKKEPEGTDAVVAAQPIIEEVEAVEA
DVETVQLTVPEAAPNGDLTPEMILSMMDR
NT seq
2430 nt
NT seq
+upstream
nt +downstream
nt
atgaagtgttccatattggtgcaggtattacccatggaagggggaccgactgaggccgtg
gtggaagatgcaggggatgctttcaaggccaaggagtgcaagacataccaaaggcggcgg
gaagatgaggaggtgggagccgagctgctgcaggctgctgtgattgagcaagcacaggct
gaagttgagcctgtggtggaggcccagcaacagctggttgagagtgtagttagtgtcaac
agcagcgtggacatgatgatgatggaaaccctggaccctgccttgctgcagatgaagaca
gaagtcatggaggctgccgtcggggcacctgtcgctgtggctggtgctgctcatgaagcc
acagtcactacagtcgatgatacacagatcatcaccctgcaggtggtgaatatggaggag
cagcagttgggcttgggagagctgcagctggtgcaggtgcctgtttctgctgtgcctgtc
actgccgccaccgtggaagagctgcaggggacactggtggatgcaactgccatgcctaaa
gatggggagccggtcatctgtcacaccctgccattgcctgagggctttcaggtggtcaaa
gtgggtgcaaacggagaagtagaaactgtggagcaagatgagctccagccccaagacgat
cagcctccgcatcaggaggaggaagaagaaatggctgaaccccaaaatgaagaccccgcc
tggtccaaagatcccgactacacacctcctgttaaaaaggtcaagaagacgaagaagagc
aagctgcgctacaacacagagggtgataaagacatggatgtgtctgtgtatgatttcgag
gaggagcagcaggagggtctgctttctgaagtcaatgctgagaaagttgtgggtaacatg
aaaccacccaaaccaaccaaaatcaagaagaaaggtgttaagaagacattccagtgtgag
ctgtgcagttacacttgcccacgccggtccaatctggaccgccacatgaagagccacaca
gacgagaggcctcacaagtgccatctttgcggacgagcatttaggactgtgactttgctg
aggaaccatcttaatacccacacaggcaccagaccacataagtgcactgactgtgacatg
gcctttgtcaccagtggagagctggtgcgacacagacgctacaagcacactcatgagaaa
ccgttcaagtgctctatgtgtgactacgccagtgtagaggttagcaagctgaagcgccac
attcgctcccacacaggagagcgtccgttccagtgcagtctgtgcagttatgccagcaga
gatacatataagctgaagagacacatgaggacccactcaggagagaagccctatgagtgc
tatatctgtcatgcacggtttacccagagtggcaccatgaagatgcacattctgcagaag
cacacagaaaatgtggcgaaatttcactgccctcactgcgacaccgtcattgcccgcaag
agtgatcttggtgtgcatctccgtaagcagcattcctacattgaacagggcagaaagtgc
cgttactgtgatgctgtgttccacgagcgctacgctcttatccagcatcagaaatcccac
aaaaatgagaaacgcttcaagtgtgatcagtgtgactatgcatgccgccaggagcgtcac
atggtcatgcacaagcgcacacatactggggagaagccatatgcctgcagccaatgtgag
aagacctttaggcagaaacagctgttggacatgcactttcgccgctatcatgaccccaac
tttgtacccacatcctttgtatgcaccaagtgcggaaagaccttcactcgcaggaatacc
atggcaagacatgcagagaactgcactggtatggattctgctgatggagagaacggaact
ccacccaaaaggggccgtggaggcagaaagaggaagatgcggtctagaaaggatgatgac
gatgatgatgacagtgatgagcatggtgaacctgaccttgatgacattgatgaagaggat
gaggatgaccttcttgatgaagaccagatgggtttgctagaccaggctccacccagtgtt
ccaatccccgcaccagctgagccaccaatcaagaggaaacggggcagaccccctaagaac
gcacccaaggtctctcctaccaagtccattaccaaaaccaccacagctgctgccattatc
caggtggaggatgaaagcacaggggccattgagaacatcattgtgaagaaggagccagag
ggcactgacgcagttgtagctgcccagccgatcatagaggaagtggaggcggttgaggcc
gatgtagaaacggtgcagttaacagtcccagaagctgcacctaacggtgatcttactcct
gaaatgatccttagcatgatggaccggtga
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integrated database retrieval system
