KEGG   Danio rerio (zebrafish): 415167
Entry
415167            CDS       T01004                                 
Symbol
lsm6
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm6
  KO
K12625  U6 snRNA-associated Sm-like protein LSm6
Organism
dre  Danio rerio (zebrafish)
Pathway
dre03018  RNA degradation
dre03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:dre00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    415167 (lsm6)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    415167 (lsm6)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:dre03019]
    415167 (lsm6)
   03041 Spliceosome [BR:dre03041]
    415167 (lsm6)
Messenger RNA biogenesis [BR:dre03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     415167 (lsm6)
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     415167 (lsm6)
Spliceosome [BR:dre03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    415167 (lsm6)
SSDB
Motif
Pfam: LSM SM-ATX
Other DBs
NCBI-GeneID: 415167
NCBI-ProteinID: NP_001002077
ZFIN: ZDB-GENE-040625-50
Ensembl: ENSDARG00000036995
UniProt: Q6IMW9
LinkDB
Position
1:39345955..39355816
AA seq 80 aa
MSLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIAVEQTEEYVNGQLKNKY
GDAFLRGNNVLYISTQKRKM
NT seq 243 nt   +upstreamnt  +downstreamnt
atgagtctccgaaagcagacaccaagtgatttcctgaagcagatcattgggaggccagtg
gtggtgaaactgaactctggtgtcgattacagaggagtcctggcctgccttgacggctac
atgaatattgcggtggaacagacagaggaatatgtcaacggccaactgaagaacaagtat
ggagatgcattcctcagaggaaataatgtgttatacatcagcacccagaagaggaagatg
tga

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