Danio rerio (zebrafish): 436756
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Entry
436756 CDS
T01004
Symbol
sox1a
Name
(RefSeq) transcription factor Sox-1a
KO
K09267
transcription factor SOX1/3/14/21 (SOX group B)
Organism
dre
Danio rerio (zebrafish)
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
dre03000
]
436756 (sox1a)
Transcription factors [BR:
dre03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
436756 (sox1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SOXp
HMG_box
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
436756
NCBI-ProteinID:
NP_001002483
ZFIN:
ZDB-GENE-040718-186
Ensembl:
ENSDARG00000069866
UniProt:
Q6DGL6
B2GNY1
LinkDB
All DBs
Position
9:21722734..21724661
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AA seq
336 aa
AA seq
DB search
MYSMMMETDLHSPGPQTNTNPGQTGPNSGSKANQDRVKRPMNAFMVWSRGQRRKMAQENP
KMHNSEISKRLGAEWKVMSEAEKRPFIDEAKRLRAMHMKEHPDYKYRPRRKTKTLLKKDK
YSLAGGLLGGAGGGVGMSPAGVGQRLESPGGHGSSASAGYAHMNGWANGTYSGQVAAAAA
AAAMMQEAQLAYSQHPGSGSHHHHAHHHHPHNPQPMHRYDMTALQYSPISNSQSYMSASP
SGYGGISYTQHQNSSVATPAAIGTLSSLVKSEPNISPPVTTHSRGPCPGDLREMISMYLP
TGESGDPSVQSRLHALPQHYQSTTAGVNGTVPLTHI
NT seq
1011 nt
NT seq
+upstream
nt +downstream
nt
atgtatagcatgatgatggaaacggaccttcattccccgggaccccaaaccaacacgaac
ccggggcaaacgggtccaaattcggggagcaaagccaatcaagaccgcgtaaagagaccc
atgaacgcgtttatggtctggtctcggggccagcgccgaaaaatggcacaggagaacccc
aaaatgcacaactctgaaattagcaaaagactcggtgctgagtggaaggtgatgtcagag
gctgaaaagcggccctttattgatgaggcgaagcggttgcgagccatgcacatgaaagag
catccggattacaaatacagaccgaggcgcaaaaccaagaccctgcttaaaaaggacaag
tactcgttggcgggtggcttgctcggcggtgcgggtggtggagtcgggatgagtcctgcg
ggggtcggccagaggttggagagtcctgggggtcacggaagctcggccagcgctggctac
gcgcacatgaacggctgggcgaacggcacttactccggccaggtggctgccgcggcggcg
gccgccgcgatgatgcaggaggcgcagctcgcttacagccagcaccccggcagtggctct
caccatcaccacgctcatcaccatcacccgcacaatcctcagcccatgcaccgctacgac
atgactgcactccagtacagccccatctcgaactcccagagctacatgagcgcgtccccg
tccggctacggtgggatatcatacacgcagcatcagaactccagcgtcgcgactcctgcc
gccatcggcacgctgagctcgctcgtcaagtccgaacccaatataagtcccccggttacc
acgcactcccgaggcccttgccccggagacttgagagagatgattagcatgtatttaccg
accggggagtccggggatccgtctgtgcagagcagactgcatgccttaccgcagcactat
cagagcacgactgccggagtaaacggaactgtcccactgacgcatatttga
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