Danio rerio (zebrafish): 436927
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Entry
436927 CDS
T01004
Symbol
pdlim5a
Name
(RefSeq) PDZ and LIM domain protein 5a
KO
K19867
PDZ and LIM domain protein 5/6/7
Organism
dre
Danio rerio (zebrafish)
Pathway
dre04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
436927 (pdlim5a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
dre04990
]
436927 (pdlim5a)
Domain-containing proteins not elsewhere classified [BR:
dre04990
]
LIM domain-containing proteins
PDZ-LIM family proteins
436927 (pdlim5a)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
LIM
PDZ
DUF4749
PDZ_6
PDZ_2
LIM_FHL2-3_N
Motif
Other DBs
NCBI-GeneID:
436927
NCBI-ProteinID:
NP_001002654
ZFIN:
ZDB-GENE-040718-401
Ensembl:
ENSDARG00000101777
UniProt:
Q6DG04
A0A0R4IN44
LinkDB
All DBs
Position
5:complement(7722001..7844217)
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AA seq
551 aa
AA seq
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MSGKYSVVLQGPAPWGFRLQGGKDFNMPLSISRLTDAGKAAKAGVAVGDLVLSIDGISTD
GMNHLEAQNKIKASSDKLNLSLQKASSLPKPDVAPKDDCVEIIKPVPMTTSIPFSSDITN
STHITSSSNRSARPFGGAGSPPIAFIPSTASAFAPASTAQYPNPLSPPTDGSPNHQPTVP
RPSVYNTPINLYSDENACEVAMGQRRGLLESQGESCQLNGLPRVPITETDIEFYHVPTHG
DASRKRIMEDTEDWRPRTGTSQSRSFRILAQITGTESELDRAQEAEAAKKTTNEDVDDCQ
PSAHITCPVKTMIKAPATPVRNSAGFITPTFGVVSSSTPLGPALDRPMPRPHPKDEASLV
QRAEHIPAGTRTPMCAHCDMVIRGPFLVAMGKSWHPEEFTCAHCSVSLSELGFVEEQGSV
YCQHCYEEFFAPTCSRCHHKILGEVINALKQTWHVYCFLCASCQQPIRNDTFHLEDGEPY
CERDFYSLFGTGCRGCDFPIEAGDKFLEALGGTWHDTCFVCTVCSVSLEGQTFFSKKGKP
LCKKHAHALKI
NT seq
1656 nt
NT seq
+upstream
nt +downstream
nt
atgagcggtaaatacagtgtggtgttacagggtccggccccgtgggggttcagactgcag
ggggggaaagacttcaacatgcctctctccatttcacggctgacggatgccggaaaggct
gctaaagcaggagttgcagtgggagatctggtgctgtccatcgacggcatcagcactgac
ggcatgaaccatctggaggcccagaacaagattaaagccagctcagacaaactcaacctt
tctttgcagaaagcttcaagtctgccaaaaccagatgtggcaccaaaggatgattgtgtg
gaaatcatcaaacctgttcccatgacaacctccattccattctcctctgacatcacaaac
tccacccacatcacgtcatcctccaataggagcgctcgtccatttggaggggcggggtca
ccacccatagccttcattccctccactgcatctgcttttgcacccgcctccacagctcaa
taccctaatccactgtctccgcccactgatggctcaccaaatcatcagccgacggtgccc
cgcccatcagtctataacacacccatcaatctttactctgatgaaaatgcctgtgaggtt
gccatgggccagaggcggggcctgctggaaagccagggtgagagctgtcagctgaatgga
cttccccgtgtgccaatcacagagacagacattgagttttatcatgtcccgactcatggt
gacgccagcaggaaacgcatcatggaggacaccgaggactggcgccccaggacgggaaca
tcacagtcccgctccttccgcatcctcgctcaaatcaccggcactgaatctgaactcgat
cgcgctcaggaggctgaagcagcaaagaaaaccacaaatgaggatgtggatgattgtcaa
ccctctgctcacatcacttgtcctgttaaaaccatgattaaagctccagcaacacctgtc
agaaacagcgcaggcttcattactcccacatttggtgttgtgagcagcagtacacctcta
ggccccgccctggatcggcccatgccccgcccacaccctaaagacgaagcctctttggtt
cagcgggcagaacacattcctgctggaactcgcactcctatgtgtgctcactgcgacatg
gtgatcaggggtccatttctggtggcgatgggtaaatcgtggcacccggaggagttcacc
tgcgctcactgcagtgtttctctgagcgagcttggctttgtggaggaacagggctccgtt
tactgccagcactgctatgaagagttctttgctccgacctgctcacgctgccatcacaag
atcctgggggaagtgatcaatgcactcaagcagacgtggcacgtgtattgcttcctgtgc
gcttcctgtcagcaacccatcagaaatgatacgtttcacctggaggatggagagccgtac
tgtgagagagacttttacagtctgtttgggacgggttgccgtggctgtgatttcccaata
gaagcgggagacaagtttctagaggccctgggcggcacctggcacgacacctgcttcgtg
tgcacagtgtgcagtgtcagtctggagggtcagaccttcttctccaaaaagggcaaaccg
ctttgcaagaaacacgctcacgctctcaaaatatag
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