Danio rerio (zebrafish): 445157
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Entry
445157 CDS
T01004
Symbol
lsm1
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm1
KO
K12620
U6 snRNA-associated Sm-like protein LSm1
Organism
dre
Danio rerio (zebrafish)
Pathway
dre03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
445157 (lsm1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dre03019
]
445157 (lsm1)
Messenger RNA biogenesis [BR:
dre03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
445157 (lsm1)
mRNA degradation factors
5'-3' decay
Lsm complex
445157 (lsm1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
445157
NCBI-ProteinID:
NP_001003551
ZFIN:
ZDB-GENE-040801-68
Ensembl:
ENSDARG00000043177
UniProt:
Q6DBW5
LinkDB
All DBs
Position
8:44613174..44618213
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AA seq
133 aa
AA seq
DB search
MNYMPGTASLIEDIDKKHLVLLRDGRTLIGILRSIDQFANLVLHQTVERIHVGKKFGDIP
RGIFVVRGENVVLLGEVDLDKECDQILQRVSIEEILEEQRTEQQAKQESERLKLQAVKER
GLSIPKADTLDDF
NT seq
402 nt
NT seq
+upstream
nt +downstream
nt
atgaattacatgccagggaccgcgagcctcatcgaggacatcgataaaaaacaccttgta
ctgcttcgagatggaagaacgttaattggcatcctcagaagtatagatcagtttgccaat
ctagttttgcatcagacagttgaacgtatccatgtaggtaaaaaatttggtgacatacct
cgagggatatttgtcgtcagaggagaaaatgttgtcttgcttggagaagtagatctggat
aaagaatgtgatcaaatcctccagagagtttctattgaggaaattttggaagaacagcgt
acagaacagcaagccaagcaagaatcagagaggctaaagctacaggctgtgaaagagcga
gggttatcgattcctaaagctgacacattagatgatttctga
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integrated database retrieval system
