KEGG   Danio rerio (zebrafish): 445302
Entry
445302            CDS       T01004                                 
Symbol
thoc3
Name
(RefSeq) THO complex subunit 3
  KO
K12880  THO complex subunit 3
Organism
dre  Danio rerio (zebrafish)
Pathway
dre03013  Nucleocytoplasmic transport
dre03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:dre00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    445302 (thoc3)
  09122 Translation
   03013 Nucleocytoplasmic transport
    445302 (thoc3)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:dre03019]
    445302 (thoc3)
   03041 Spliceosome [BR:dre03041]
    445302 (thoc3)
Messenger RNA biogenesis [BR:dre03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     445302 (thoc3)
Spliceosome [BR:dre03041]
 Complex C
  Other components
   EJC/TREX
    445302 (thoc3)
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    445302 (thoc3)
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_IFT122_1st Beta-prop_WDR5 WD40_CDC20-Fz WD40 Beta-prop_WDR3_1st WD40_Prp19 Beta-prop_EML_2 WD40_WDHD1_1st ANAPC4_WD40 WDR55 Beta-prop_Aladin Beta-prop_WDR36-Utp21_2nd EIF3I Beta-prop_CAF1B_HIR1 Beta-prop_WDR3_2nd Beta-prop_WDR19_1st WD40_Gbeta Beta-prop_RIG_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_2nd Beta-prop_IFT140_1st WD40_MABP1-WDR62_2nd Beta-prop_EML eIF2A Beta-prop_Vps41 Beta-prop_WDR36-Utp21_1st DSE1_N Beta-prop_WDR35_TULP_N WD40_RFWD3 Beta-prop_NOL10_N RMC1_N Beta-prop_TEP1_C NBCH_WD40 Beta-prop_HPS5 WDR90_beta-prop_4th WD40_MABP1-WDR62_1st Tricorn_2nd TRM82_WD Beta-prop_ACSF4 PD40 PAC11 Beta-prop_NUP159_NUP214 B-prop_COPA_B_2nd Beta-prop_SPT8 Beta-prop_WDR75_1st Beta-prop_WDR41 Peptidase_S9_N ASA1 Beta-prop_EIPR1 Beta-prop_NWD2_C Beta-prop_Nup120_160 Beta-prop_WDR11_1st Beta-prop_ELP1_1st Cytochrom_D1 WD_LRWD1
Other DBs
NCBI-GeneID: 445302
NCBI-ProteinID: NP_001003758
ZFIN: ZDB-GENE-040808-14
Ensembl: ENSDARG00000056517
UniProt: Q6AXK9 A0A8M1N1T7
LinkDB
Position
14:29778857..29784338
AA seq 322 aa
MASSYYQEMQEVFRNNNKSREFPAHSAKVHSVAWSCDGKRLASGSFDKTASVFVLEKDRL
VKENNYRGHGDSVDQLCWHPTNPDLFVTASGDKTIRIWDVRTTKCMATVSTKGENINICW
SPDGQTIAVGNKDDVVTFIDAKTHRPRAEEQFKFEVNEISWNNDNDMFFLTNGNGCINIL
SYPELKLIQSINAHPSNCICIKFDPTGKYFATGSADALVSLWNVEELVCVRCFSRLDWPV
RTLSFSHDGKMLASASEDHFIDIAEVETGEKLWEIQCESPTFTVAWHPKRPLLAYACDDK
EGKYDSNREAGTVKLFGLPNDS
NT seq 969 nt   +upstreamnt  +downstreamnt
atggcgtcctcgtactatcaggagatgcaggaggtgttcaggaataacaataaaagcaga
gagttcccggctcacagtgctaaagtgcactcggtggcctggagctgtgatggaaaacga
ctggcgtccggttcgtttgacaaaactgccagcgtatttgtcctggaaaaagaccgactg
gtgaaggaaaacaactaccgtgggcatggagacagtgtggatcagctgtgctggcatccc
accaaccctgatctgttcgttactgcatcaggagacaagaccatccgcatctgggatgtg
cggaccaccaaatgcatggccacagtcagcacaaaaggggagaatatcaacatttgctgg
agtcctgatggtcagaccatcgctgtaggtaacaaggatgatgttgtaacgttcattgat
gccaaaacacaccgtccacgtgctgaggagcagttcaagtttgaggtcaacgaaatctcc
tggaataatgacaatgacatgttcttcctgaccaacggcaatggatgcatcaatatatta
agttaccctgaactgaagctcatccagtcaattaatgcccatccatccaactgcatctgc
attaagtttgatccgactgggaagtattttgccactggaagtgcagatgccctggtcagc
ctgtggaacgtggaggagctggtgtgtgtgcgatgcttctcaagactggactggcctgta
cgaactcttagcttcagtcatgatggtaaaatgctggcatctgcatcagaagaccatttc
attgacatagcagaagtagagacaggggagaaactgtgggaaattcagtgcgagtctcca
accttcactgtagcctggcatccgaagaggccgctgttagcatatgcctgtgacgataaa
gagggcaaatacgacagcaaccgagaagcgggcaccgtcaaactcttcggccttcccaat
gattcctga

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