Danio rerio (zebrafish): 446117
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Entry
446117 CDS
T01004
Symbol
sf3b1
Name
(RefSeq) splicing factor 3B subunit 1 isoform X2
KO
K12828
splicing factor 3B subunit 1
Organism
dre
Danio rerio (zebrafish)
Pathway
dre03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
446117 (sf3b1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dre03041
]
446117 (sf3b1)
03036 Chromosome and associated proteins [BR:
dre03036
]
446117 (sf3b1)
Spliceosome [BR:
dre03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
446117 (sf3b1)
Complex B
446117 (sf3b1)
Complex C
U2 SnRNP specific factors
446117 (sf3b1)
Chromosome and associated proteins [BR:
dre03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
446117 (sf3b1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SF3b1
PPP2R1A-like_HEAT
TOR1L1_N
HEAT_EZ
HEAT_EF3_N
HEAT_ECM29
Htt_N-HEAT_1
HEAT_2
XMAP215_CLASP_TOG
DUF2298
Motif
Other DBs
NCBI-GeneID:
446117
NCBI-ProteinID:
XP_073768964
ZFIN:
ZDB-GENE-040827-3
Ensembl:
ENSDARG00000056138
LinkDB
All DBs
Position
9:complement(33841935..33857177)
Genome browser
AA seq
1161 aa
AA seq
DB search
MDVMKEQQLSKEEREIRLQMVEKAKAGELKAVNGSAASQAAAKRKRRWDQTADQTPSNST
PKKVSSWDQADGGSETPGHTPGHTPSNSRWDETPGRPKGSETPGATPSTRMWEPTPSHTP
AGAATPGRDTPGHATPGHGGATSSVRKNRWDETPKTERETPGHGSGWAETPRTDRGDESV
GETPTPGASKRKSRWDETPASQMGSSTPLLTPGKTPLGTPAMNMATPTPGHLMSMTPEQL
QAWRWEREIDERNRPLTDEELDAMFPEGYKVLPPPAGYVPIRTPARKLAATPTPIGGMTG
FHMQTEDRSMKQVNDQPSGNLPFLKPDDIQYFDKLLVEVDESTLSPEEQKERKIMKLLLK
IKNGTPPMRKAALRQITDKAREFGAGPLFNQILPLLMSPTLEDQERHLLVKVIDRILYKL
DDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLAKAAGLATMISTMRPDIDNMDEY
VRNTTARAFAVVASALGIPSLLPFLKAVCKSKKSWQARHTGIKIVQQIAILMGCAILPHL
RSLVEIIEHGLVDEQQKVRTISALAIAALAEAATPYGIESFDSVLKPLWKGIRQHRGKGL
AAFLKAIGYLIPLMDAEYANYYTREVMLILIREFQSPDEEMKKIVLKVVKQCCATDGVEA
NYIKTEILPPFFKHFWQHRMALDRRNYRQLVDTTVELANKVGAAEIISRIVDDLKDEAEQ
YRKMVMETIEKIMGNLGAADIDHKLEEQLIDGILYAFQEQTTEDSVMLNGFGTVVNALGK
RVKPYLPQICGTVLWRLNNKSAKVRQQAADLISRTAVVMKTCQEEKLMGHLGVVLYEYLG
EEYPEVLGSILGALKAIVNVIGMHKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIA
DRGAEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKV
QERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGK
DYIYAVTPLLEDALMDRDLVHRQTASAVVQHMSLGVYGFGCEDSLNHLLNYVWPNVFETS
PHVIQAVMGALEGLRVAIGPCRMLQYCLQGLFHPARKVRDVYWKIYNSIYIGSQDALIAH
YPLIFNDEKNSYVRYELEYFL
NT seq
3486 nt
NT seq
+upstream
nt +downstream
nt
atggatgttatgaaggagcagcaactttccaaagaagagagagagatcagactacagatg
gtagagaaagcaaaagctggagagctgaaagcagtgaatggctccgctgcatctcaggcc
gcggccaaacgtaaacgtcgctgggaccagactgctgatcaaacccccagcaactcaaca
cccaaaaaagtgtccagttgggaccaagcagacggaggttctgaaacaccaggacacaca
ccagggcacacaccctccaacagtcgttgggatgagacccctggccgtcccaaaggtagt
gaaaccccaggagccactcctagcactcgtatgtgggaacccacacctagccacacccca
gcaggagctgccacaccaggccgagacacacctggacatgctacgccaggccatggaggg
gccacttccagtgtgcgcaagaaccgctgggatgagacaccaaagacagagagagaaaca
cctggtcatggcagtggctgggctgaaaccccacgtacagacagaggagacgagtcggtg
ggtgagacgcccactccaggtgcaagcaagaggaagtcaagatgggatgaaacaccagcc
agccaaatgggctcttcaactcccctgctcacccctggaaaaacccctctgggtacacct
gctatgaatatggccacgcccactccaggtcacctgatgagcatgactccagaacagctg
caggcttggcggtgggagcgggagattgatgaaaggaaccgtccattgactgatgaggaa
cttgatgcaatgtttccagagggatacaaagttctgccccctccagcaggctatgtgccc
atccgtacccctgcacgtaaattagctgctactccaacccctattggaggcatgactggc
ttccatatgcaaacagaagaccgatcgatgaaacaagttaacgaccagccatccggaaac
ctgcccttcctcaagccagatgacattcagtactttgacaaactgctggtcgaagttgat
gagtccacgcttagtccagaagaacagaaggagcgcaagatcatgaagctgctcctgaag
ataaaaaatggaacacctcccatgagaaaggctgctcttcgtcaaatcacagataaggcc
agggagtttggtgcaggacccctcttcaaccagatcttgccactgctaatgtctcctaca
ctggaggaccaggagcgccatctcttggtgaaagtcatcgatcgtatcctctacaaactt
gatgatttggttcggccatatgtgcacaagattcttgtggtgattgagcccttgctgatc
gatgaagattactatgctagagtagagggaagagaaatcatctctaatttggcaaaggct
gctggtctggccactatgatctccaccatgaggcctgacattgacaacatggacgagtat
gtgagaaacacaacagctcgtgcttttgcagttgtggcgtctgccctgggcattccatct
ctcctgcctttcctcaaggctgtttgcaaaagcaagaaatcctggcaggctcgccacacg
ggtattaagatcgtccagcaaatcgctattctcatgggctgtgctatcctgccacatctt
cgcagcttggtggagattatcgagcatggtctcgttgatgagcagcagaaagtacgaacc
atcagtgctttggctattgctgccttggctgaagctgctacaccatacggtatcgagtcc
tttgattctgtcctgaaacctctttggaagggtatcaggcaacacagaggcaagggtctt
gctgccttcttgaaagctattggatacttgattcctcttatggatgctgaatacgccaac
tactacaccagagaagtgatgcttatcctcattcgagagttccagtcacctgatgaagaa
atgaagaagattgtccttaaggtggtgaagcagtgctgtgccacagatggtgtggaagcc
aattacattaaaacagagatcctgccccccttctttaaacatttctggcagcacagaatg
gcattggataggcgcaactacagacagttggtagacactacagtggagctggccaataaa
gtaggggcagctgagattatctcccgtatcgtggatgacttgaaggatgaagctgagcag
tacagaaaaatggtgatggagaccattgagaaaatcatgggtaaccttggtgccgctgac
attgatcacaaactggaggagcagcttattgatggtatcctgtacgccttccaggaacaa
accactgaggactctgtgatgctgaatggttttggtacggtggtaaatgctctgggtaag
agagttaaaccgtacttgcctcagatctgcggtacagttctgtggcgtctcaacaacaaa
tctgccaaagtccgtcaacaggctgctgacctgatctctcgcacagcggtggttatgaag
acatgccaagaggaaaagcttatgggccatttgggtgtggtgttgtatgagtacctggga
gaagaatatcctgaagtgctgggtagcattcttggagccctgaaagccatcgtcaatgtc
attggtatgcacaagatgacgcctcctatcaaagacttgcttccacgtttgactcccatc
ttgaagaacagacatgagaaggtgcaggagaactgcattgatcttgtgggcagaattgct
gacaggggtgcggagtacgtgtctgccagggaatggatgcgcatctgttttgaattgttg
gagttgttgaaagcccacaagaaggccatccgcagagctactgtcaacactttcggctat
atcgccaaggccattggtccgcatgatgtgctggccacactgctcaataatcttaaggtg
caggagcgtcagaaccgtgtgtgcacaacagtagccattgctattgtggctgagacctgt
tcgccattcaccgtgcttccagcgctgatgaacgagtatcgtgttcctgagcttaatgtg
cagaatggtgtcctaaagtctctatccttcctgtttgaatatattggtgaaatgggcaaa
gattatatatatgctgtcacgcctttgttggaagatgctctgatggacagagatctggta
cacagacagactgctagtgctgtggtgcagcacatgtctttaggggtttatggcttcggc
tgtgaagattctcttaatcatttactcaactatgtttggccaaatgtctttgaaacgtct
cctcatgtcatccaagctgtaatgggggctcttgagggtctgcgagtggcaattggaccc
tgccgaatgctgcagtattgcttacagggtttgtttcatcctgctcggaaagtgcgtgat
gtttactggaagatctacaactccatttatattggttcccaggatgctctaatcgcacat
tatcctctaatcttcaacgatgagaagaactcgtatgttcgttatgagctggagtacttt
ctgtga
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integrated database retrieval system
