Danio rerio (zebrafish): 448949
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Entry
448949 CDS
T01004
Symbol
cnot1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
dre
Danio rerio (zebrafish)
Pathway
dre03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
448949 (cnot1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dre03019
]
448949 (cnot1)
Messenger RNA biogenesis [BR:
dre03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
448949 (cnot1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
448949 (cnot1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
Med13_C
Motif
Other DBs
NCBI-GeneID:
448949
NCBI-ProteinID:
NP_001073420
ZFIN:
ZDB-GENE-040915-1
Ensembl:
ENSDARG00000004174
UniProt:
A1A5H6
LinkDB
All DBs
Position
25:17313568..17346929
Genome browser
AA seq
2374 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECVSLITKPNFISTLCYAIDNPLHYQKSLKPSPHLFTQLSKVLK
LSKVQEVILGLALSNSSNADLRGFAAQFVKQKLPDLLRSYVDADLGGNQEGGFQDIAIEV
LHLLLSHLLFGQKGSSGVGQEQIDAFLKTLCRDFPQERCPVVLAPLLYPDKRDILMDRIL
PDSGDLNKTMMESSLADFMQEVGYGFCASLEECRNIILQYGVREVTASQVARVLGMMART
HSGLSDGISLQTITNPVGGGGIWSDGKDKSDSSQAWNVEVLIDVVKEVNPNLNFKEVTYE
LDHPGFLIRDSKGLQIVVYGIQRGLGMEVFPVDLIYRPWKHAEGQLSFIQHSLLSPEVFC
FADNPCHTVAIDTLKAPPEDDNREIATWKSLDLVESLLRLSEVGHYEQVKQLFSFPIKHC
PDMLVLALLQISTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
SMAEWYMRGEQYDQAKLSRILDVAQDLKSLSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGEPFIQACVTFLKRRCPSIMGGLAPEKDQPKSAQLPPETLATMLACLQSCAG
SVSQELSETILTMVANCSNVMNKARQPPPGVLPKGRAPSTSSLDAISPVQMDPLSAMGSL
SLGVSSTSHTPSMQGFPSLQGSAFSNPQSPAKAFSNLPNPNPSTAFPGINPLSSQLQGPL
STSLSGIGSGLGMPTVSSDVFSARKMSTPGLNPPTFQQTDLSQVWPEANQHFSKEIDDEA
NSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSNIKREREVFNCMLRNLFEEYRFFPQYPDK
ELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFGSKMYYFGIAALDRFKNRLKDY
PQYCQHLASIAHFLQFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSLALAQAQAQSQPPK
APQPGQASTLVTTATTTTTAAKTTTITRPTAVGPKKDVPPSINTTNIDTLLVATDQTERI
VEPPENVQEKIAFIFNNLSQSNMSQKVEELKETVKEEFMPWVSQYLVMKRVSIEPNFHSL
YSNFLDTLKNPEFVKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLGMITLAKNK
PILYTDLELKSLLLEAYVKGQQELLYVVPFVAKVLESSLRSVIFRPQNPWTMGIMNVLAE
LHQEHDLKLNLKFEIEVLCKNLSMDITDLKPGNLLRDKDKLKTLEEQLSAPKKETKPPEE
LLPIVTTDSVPFTAAPSTPATTTACTATGPPTPQFSYHDINVYALAGLAPHININVNIPL
LQAHPQLKQCVRPAIERAVQELVHPVVDRSIKIAMTTCEQIVRKDFALDSEESHMRVAAH
HMMRNLTAGMAMITCREPLLMSIATNLKNSFAAALRAPTPQQREMMEEAAARIAQDNCEL
ACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPMVLTYQAERMPEQIRLKVG
GVDPKQLAVYEEFARNVPGFLPSNDLSQPTGFLAQPMKQQAWPTDDVAHIYEKCISDLEQ
HLHAIPPALAMNPQTQAIRSLLEAVVMARNSRDGIAALGLLQKAVEGLLDATSGADPELL
LSYRECHLLVLKALQDGRAYGPQWCNKQITRCLIECRDEYKYNVEAVELLIRNHLVNMQQ
YDLHLAQSMENGLNYMAVAFAMQLVKLLLVDERSVSHITEADLFHTIETLMRTSAHSRAN
APEGLPQLMDVVRSNYEAMIDRHHGGPNFMMHSGISQASEYDDPPGLREKAEYLLREWVN
LYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFFRLCTEMCVEISYRAQAEQQHPT
TSPAIIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLLNKVLGIVVGVLIQDHDVRQ
TEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKAPGFVYAWLELI
SHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELNKPMQILYKGTLRVLLVL
LHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLKVDMLSEINIAP
RILTNFTGVMPSQFKKDLDSYLKTRSPVTFLSELRSNLQVSNEPGNRYNIQLINALVPYV
GTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAIANQLRYPNSHTH
YFSCTMLYLFAEANAEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPAFKFWSHDF
VHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7125 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggctttgtctcaaatcagctacctggtggacaattta
actaagaaaaactacagagccagccagcaggaaatacaacatattgtgaatcgtcacggc
cctgaggcagaccggcatctattacgctgtctcttttcccatgtggatttcagtggcgat
ggtaaaagcagtggcaaagatttccaccagacacagtttctgatccaggagtgcgtgtct
cttattacgaaaccaaattttatttcaacgctttgctacgccattgacaatcccctgcac
tatcaaaagagtttgaaaccgtcacctcatttatttactcagctgagtaaagttctcaag
ctaagcaaggttcaggaggtgattttgggccttgctctgagcaactccagcaacgcagac
cttcgagggtttgctgctcagtttgtgaagcagaagctccctgacctcctccgctcgtac
gtggacgccgacctcggagggaatcaggaaggtggcttccaggacattgccatagaggtt
ctgcatctgctcctctcccatcttctgttcggtcaaaagggctcgagcggagtcggacaa
gagcagattgacgcgttcctcaaaacactgtgcagagatttcccgcaggagcgctgtcct
gtggtgcttgcaccactgctgtatcctgacaaacgggacattctcatggacaggatcctg
ccagactctggagatttaaataagaccatgatggagagttctcttgctgacttcatgcaa
gaagttggctatggcttttgtgcaagtcttgaagagtgcaggaacataatcctgcagtat
ggggtgcgagaggtgacagccagtcaggtggccagagtgctgggcatgatggcccgcact
cactcagggctgtctgacggcatcagccttcagaccatcaccaatccagtgggcggtggt
gggatctggagtgacgggaaggacaagagtgacagctctcaggcctggaatgttgaagtt
ctaattgatgtggtcaaagaagtgaaccctaatctgaatttcaaagaggtgacctatgag
ctggatcacccaggcttcctgatccgggacagtaaggggcttcagatagttgtttatggg
atccagaggggtctgggaatggaagtgttcccggtggatctcatttacagaccatggaag
catgcagaaggacagttgtcgttcatccagcactctctattgagtcctgaagtgttctgc
tttgctgacaacccttgccatactgttgctattgacaccttgaaggctccacctgaggat
gacaacagggagatagccacatggaagagcttggaccttgtagagagcctcttgcgcctc
tctgaagttgggcattatgaacaggtgaagcagctttttagcttccccatcaaacactgc
ccggacatgctggtgttggcgctcctgcagatcagtacctcctggcacaccctacgtcat
gagctcatctccaccctcatgcccatcttcctgggcaaccaccctaactctgctatcatc
ttgcactatgcctggcatggacagggccagtccccatccattcgccagctgatcatgcac
tctatggccgagtggtacatgagaggggagcaatatgaccaggccaagctatctcgcatc
ctggatgtggctcaggacttgaagtctctatcgatgctgctgaatggtactccatttgcc
tttgttattgacctagctgcacttgcctctcgccgtgaatacctcaaacttgacaaatgg
ctcactgacaaaatacgggagcatggggagccattcatccaagcgtgtgtcacatttctg
aagagacgctgcccctctattatgggtggtttggcccctgagaaagaccagccgaaaagt
gctcaacttcctcctgaaacactggctaccatgcttgcatgtttgcagtcttgtgctggg
agtgtgtctcaagagctgtcagagacaatcttgaccatggtggccaactgtagcaatgtg
atgaacaaggctcggcagccgccaccaggagtcctgccaaagggacgagcgcccagcacc
agcagtttagatgctatctcacctgtgcagatggaccctctctctgcaatgggctcttta
agtctaggtgtctcgtccacctctcacaccccgagcatgcaaggattccccagcctgcag
ggctctgccttcagtaacccccagtccccagccaaagccttctcaaacctgcccaaccca
aaccccagcacagctttcccaggaatcaaccccctctcttcacagctccaaggtcctctg
agcacaagcttgtctgggattggctcaggtttgggcatgcccaccgtcagcagtgatgtc
ttcagcgccaggaagatgagcacaccggggctaaaccccccaaccttccagcagactgac
ctctctcaggtgtggcccgaggcaaaccagcactttagtaaggagattgacgatgaagct
aacagctacttccagcgcatctacaaccatccgccacatcccacaatgtctgtggacgag
gtgctggagatgctgcaaagatttaaggactcaaacatcaagcgggaacgagaagttttt
aactgcatgctgaggaatctgtttgaagagtaccgattctttcctcagtatccagacaaa
gagctgcacatcaccgcctgcctctttgggggaatcattgagaagggcctggtcacatac
atggcgctgggcttggccttaagatacgtgctggaagccttacgcaaacctttcggatca
aagatgtattactttgggatcgctgcactagatagatttaaaaatagactgaaggactat
ccccagtactgtcagcacttggcatcaatagcccatttcctacagtttccacaccattta
caagagtatatagagtatggccaacagtcaagagaccctcctgtgaagatgcaaggctcc
attaccaccccaggcagcctggctctagcccaagcgcaagctcagtctcagccccctaaa
gccccccaacctggccaagccagcaccttagtgacaacagccaccacgaccaccaccgct
gccaaaaccacaaccatcacaagacctacagctgttggacccaagaaggatgtgccacct
tcaatcaacaccacaaacattgacaccttgttagtggccacagatcagaccgaaaggatc
gtggagcccccagaaaatgttcaggagaaaattgcttttattttcaataacttgtcccag
tcaaacatgtcccaaaaggtggaggagctaaaagagactgtgaaagaagaattcatgccc
tgggtttctcagtacctggtaatgaagcgtgtcagcattgagcccaatttccacagcctg
tattctaacttcttggacacactgaaaaacccagagtttgtcaagatggttctcaatgag
acttacagaaacatcaaggtcctccttacctcggataaggcagctgctaatttctcagat
cgatccctgctgaagaatttgggtcactggcttggaatgatcaccctagcaaaaaacaaa
cccatcctgtatacagacctggagctgaaatctcttttgttggaggcttatgtgaaaggc
cagcaggagttactgtatgttgtcccttttgtggccaaagtcttggaatcaagtctgcgg
agtgtgatcttcagaccgcagaacccttggacaatgggcatcatgaatgtactggctgaa
ctccaccaggagcatgacttaaagcttaacctcaaatttgagattgaggtactctgcaag
aatctgtctatggacatcactgatcttaagccagggaacctgctgagagacaaagataag
ctgaagaccttggaggagcagctctccgcaccaaagaaagagaccaagcctcctgaagaa
ttgctgcctatagttacaacagactctgttcctttcacagctgctccctcaactccggcc
accaccacggcctgtacagccacagggccacctacacctcagttcagctatcatgacatc
aatgtgtatgcattggctggactggccccacacataaacatcaatgttaacatcccactg
ctacaggcccaccctcagctgaagcagtgcgtgagaccagcaatcgaacgtgccgtacag
gagcttgtgcacccagtggtggaccgatccatcaagatcgccatgacaacctgtgagcag
atagtcaggaaggactttgctctagactcagaggagtctcatatgcgtgtggctgctcac
cacatgatgcgtaacctgactgccggcatggccatgatcacctgcagagagcccctgctg
atgagcattgccaccaatctgaagaacagctttgctgcagctcttagggctcccacaccc
cagcagagagagatgatggaggaggcggctgctcgcatcgcacaggacaactgtgagctt
gcatgttgctttatccagaaaacagcagtggagaaagctggcccggagatggataagaga
ctggcaactgaatttgagctgaggaagcatgctcgccaagaaggaagacgctactgtgac
cccatggtgctcacctatcaggcagagcgcatgcctgaacagatcagactgaaggttggt
ggagtggatcctaaacagctggctgtttatgaggagttcgcccgcaacgttccaggcttc
ctaccaagtaatgacctgtctcaaccaactggttttcttgctcaaccaatgaagcaacaa
gcatggcccactgatgatgtggctcacatctatgagaagtgcatttctgacctggaacag
cacctgcatgcaattccacctgcactggccatgaacccacagacccaggccatacgtagc
ctgctggaggcagttgtcatggcaaggaactcccgtgatggcattgctgccctgggactt
ttgcagaaggctgtggagggtcttcttgatgccaccagtggtgctgatcctgaattgtta
ctaagctacagggagtgccatctgttggtgctgaaagccttacaggatggccgtgcctac
ggtccacagtggtgcaacaagcaaatcaccagatgcctgattgagtgtagagatgaatac
aagtacaatgttgaggctgtggagcttctcatcagaaaccacctggtcaacatgcagcag
tatgatttgcacctagctcagtccatggagaatggcctcaactacatggcagtggcattt
gccatgcagctggtgaaactcttgctggttgatgagcgcagcgtgagccacatcactgaa
gcagatcttttccacactatcgagacactgatgaggaccagcgcccactccagagccaac
gctcctgaaggtttgccacagcttatggatgttgtccgctccaactatgaggccatgatt
gatcgtcaccatggtggaccaaatttcatgatgcactctggaatttctcaagcatcggag
tacgatgacccaccaggccttagagaaaaggcagagtacctgctgagagaatgggtcaac
ctgtaccactcagcagcagcaggaagggacagcaccaaggccttctctgcatttgttggc
cagatgcaccagcagggtatcctaaagactgatgacttgatcactcgctttttccggcta
tgcacagaaatgtgtgtagagatcagttatcgcgctcaagctgaacagcagcacccaacc
accagtcctgccattattagggccaaatgctaccataacttggatgctttcgttcggctt
attgcccttctggtcaaacactctggagaggccaccaacacagtcactaaaattaacctg
ctcaacaaggttttgggcattgtggtgggtgtgttaatccaggatcatgatgtgaggcag
acagagttccagcagcttccataccacagaatcttcatcatgctcttactggagctaaac
gcaccagagcatgtgctggagaccatcaacttccagactctcactgccttctgcaacacc
ttccacatcctgaggccgactaaagcacctggttttgtgtatgcttggctagagctcatc
tctcaccgcatcttcattgccaggatgcttgctcacaccccacaacagaagggttggcct
atgtatgcccagctgctgatagacttgtttaaatatcttgcacccttcctaaggaatgtt
gaactcaacaaacctatgcaaattctctacaagggaacacttcgtgtgctgcttgtcctg
ctacatgacttcccagaattcctgtgtgactaccattacggattctgtgatgtcatccca
cccaactgcatccagctgaggaatctgatcctgagtgccttcccccgcaacatgaggctt
ccggaccccttcacccctaatttaaaggtggatatgctgagtgagatcaacatcgctccc
cgcatcctcacaaacttcactggtgtgatgccgtcccagtttaagaaggatcttgactcc
tacctcaagacccgctctcctgtcaccttcctctctgagctgcgcagcaacctgcaggtg
tccaatgagccaggcaaccgctacaacattcagctgatcaacgctctggtgccgtacgtt
ggaacccaggccattgcccacattcacaacaagggcagcactccctccatgagcaccatc
acacactcggcacacatggacatcttccagaacctcgcagtcgatctagacactgagggt
cgctatctgttcctgaatgcgatagccaatcagctgcgttatccaaacagccacacgcac
tacttcagctgtaccatgctgtatctgtttgccgaggccaatgctgaagccattcaagag
cagatcaccagggtcttgctggagaggctgattgtgaacaggccacacccgtggggtctg
ctcatcaccttcatagagctgatcaagaaccctgccttcaagttctggagccatgatttt
gtgcactgcgccccagagatcgagaagttgttccagtcagtggctcagtgctgtatgggg
cagaagcaggcccagcaggtgatggagggaaccggtgccagttaa
DBGET
integrated database retrieval system
