Danio rerio (zebrafish): 449647
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Entry
449647 CDS
T01004
Symbol
taf1b
Name
(RefSeq) TATA box-binding protein-associated factor RNA polymerase I subunit B
KO
K15213
TATA box-binding protein-associated factor RNA polymerase I subunit B
Organism
dre
Danio rerio (zebrafish)
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dre03021
]
449647 (taf1b)
Transcription machinery [BR:
dre03021
]
Eukaryotic type
RNA polymerase I system
Basal transcription factors
SL1/TIF-1B
449647 (taf1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rrn7_cyclin_C
Rrn7_cyclin_N
Zn_ribbon_RRN7
HTH_TGH
DUF5816
Motif
Other DBs
NCBI-GeneID:
449647
NCBI-ProteinID:
NP_001020469
ZFIN:
ZDB-GENE-041008-2
Ensembl:
ENSDARG00000028937
UniProt:
Q4KMI1
LinkDB
All DBs
Position
20:complement(32269479..32289067)
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AA seq
576 aa
AA seq
DB search
MDEQITGGYSEPCGQCAAVDWGVSDEGQFFCKSCHNVIEKIREVEDVTSLHHKHGRISIV
RKPKKKKHDSEREWLVCEGFQFILKHQAKALVSLGVCMKFETEVLWNFWKRYLQNTRQAF
TENPVSTARFEVFMKSQSGSESDTQSHQSCYSEASSDTEMSVSGISVDGRSAVSSESLHS
IPQKGRRGRVSNLMSMPRTLAMCYLALLWVREAITLTDLLRMVAEGHIPYLHLHETFPAE
MRMFGKDVQIFRVLFFPSYAFIKKEALVLAKIMKLPSFPTISQDCLFHPVPLTVRYLLEA
NLPDALHVWVQKVITGAGMDSDSFLTFDPTDKKPHLLSYDVQAVAVIIVAMKLLFKLDDH
VEWKLSHDAAKKKNNKVFSLERWFNIVQPVLEQARLKEEQEEARRQWNFANPFITNLKRK
SLVLKKRRVTDHLQQRFRRFSDPAPEQSTSTTNSHTSFRFSWGEEEGSDGPSMFNQNLDC
TVKAKAVNGLANQRYWHPELRICPENKCVSHFSKFEPSLPRMFVWVLDLFSFILGVLQSD
VYEEVLNVERRFLKKNYRLDSRLTSSHLKKKKGQIL
NT seq
1731 nt
NT seq
+upstream
nt +downstream
nt
atggacgaacaaattactggtggatatagtgagccatgcggacagtgcgctgctgtggac
tggggagtgtcagacgagggtcagttcttctgtaagagctgccacaatgtcatcgagaaa
ataagggaggtagaggatgttaccagccttcatcataagcatggcaggatctcaatagtc
aggaaacccaagaagaaaaaacatgattctgaaagggagtggttggtctgtgagggattt
cagttcatcctcaaacaccaggccaaggctttggtcagtctaggtgtttgtatgaagttt
gagacagaagttctgtggaatttctggaagaggtacctgcagaacacaaggcaagctttt
actgaaaatccagtgtccactgcgaggtttgaagtgtttatgaagtcccagagtggctca
gagtctgacacccagagccaccagtcatgctacagtgaggcttcttcagacacagagatg
tctgtctcaggtatatctgttgatggaagatccgctgtaagttcggagtccctacattct
ataccccaaaaagggaggagaggaagagtatccaatcttatgtccatgccacgcacactg
gccatgtgctatttggctctgctgtgggttcgagaggccatcactctgactgacctgctg
aggatggtcgcagaaggccatattccttacttgcaccttcacgaaacatttccagcagag
atgagaatgttcgggaaagatgtccaaatctttcgggttctgttctttccatcttatgcg
ttcatcaaaaaagaagctttagttctggcaaagatcatgaagttgccgtccttcccaaca
atttctcaggattgtcttttccacccagttccactcactgtccgctatctgctagaggca
aaccttccagatgctcttcatgtttgggtccagaaggttataactggagctggtatggat
agcgattcctttctgacgtttgaccccactgataagaagcctcatctcttgagttatgat
gttcaagctgtagctgtcattattgtggccatgaagctccttttcaagttggatgatcat
gtggaatggaaattatctcatgatgcagccaagaagaagaataataaagtcttcagttta
gaaaaatggtttaacattgtacagcctgtcttagagcaagccagactcaaggaggaacaa
gaagaagctcgacggcagtggaattttgctaaccctttcatcacaaatctgaagcgcaag
tccctagttctcaaaaagaggcgtgtgactgatcatttgcagcagagatttcagaagttt
gcagatcctgcaccagaacagtccacgtccaccacaaactctcacaccagcttccgcttc
agctggggagaggaggagggttcagatggacccagtatgtttaaccagaatttggactgt
actgttaaggcaaaagcggtcaatggcctggccaaccaaagatactggcatcctgaactg
aggatatgcccagagaataaatgtgttagtcatttctcaaaatttgagcccagtttacct
cggatgttcgtgtgggtgcttgatctcttctcgttcattctgggtgtccttcagtctgac
gtgtacgaagaggtcctcaacgttgagcgacgcttcttaaagaaaaattatcggctcgac
agtcgattgacttcttctcatctgaaaaagaaaaaaggtccaattctgtaa
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