Danio rerio (zebrafish): 450021
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Entry
450021 CDS
T01004
Symbol
fip1l1b
Name
(RefSeq) pre-mRNA 3'-end-processing factor FIP1
KO
K14405
pre-mRNA 3'-end-processing factor FIP1
Organism
dre
Danio rerio (zebrafish)
Pathway
dre03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
450021 (fip1l1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dre03019
]
450021 (fip1l1b)
Messenger RNA biogenesis [BR:
dre03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
450021 (fip1l1b)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fip1
Motif
Other DBs
NCBI-GeneID:
450021
NCBI-ProteinID:
NP_001006042
ZFIN:
ZDB-GENE-041010-138
Ensembl:
ENSDARG00000070431
UniProt:
Q5XJD3
B2GRL3
LinkDB
All DBs
Position
1:15766904..15788602
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AA seq
570 aa
AA seq
DB search
MSAEEADKTTTTDASAGDEEEEWLYGDEGESKETEEEEAKLTAAISATSTTPVAEDAPTT
TNNSSDSATPPTTTTTTGNGVASQEEAPGEDEDSESDSDDDDDDVRVTIGDIKTGAPQYT
GYGGTPVNLNIKSAGSRAYGAGAKVKGVDLEAPGSINGVPVLEADMESFEEKPWRKPGAD
LSDYFNYGFNEDTWKAYCEKQKRLRMGLDVLNIGSTTSKISVQQGRTGNNEKEITIPAHA
SKAEFTSPSNLYKAGLNQGRISPPHWAGPPSQDLSYYTKTPGTIDVIGGQTATISRVEGR
RRHNLEGNNIQVISEHSSSEVEPEVQKMPPPFFPPGPLPPNIPPPPFLPPPVSQAPPLIP
PHRMPITVPPPNFPPPTGGPPPSLIPTLDNSGHPGGYDGRPVAPYPFPTGGFPPPMQGAV
NPWPGLMENPKQWDYYPRRDKEREKERERERQRDRGHERDHSPNAGPYNSMAMCSDEERY
RSYRDYGDRGYERHRERASREKEERHGGRRHREKEEGRHKSSRSSSRRRHESEEGDSHRR
HKHKKSKRSKEGKEPSEERSADQENQEAME
NT seq
1713 nt
NT seq
+upstream
nt +downstream
nt
atgtctgcggaggaggcggataaaaccaccaccactgatgcgagtgcaggagacgaggag
gaggaatggctgtacggcgatgaaggtgaaagtaaagaaactgaggaagaagaggccaaa
ctgacagcagccatcagtgcaacgtccactactcctgttgcagaggacgctcccacaact
accaacaactcctctgattctgccaccccacctgcaaccacaaccacaactggaaatggt
gtggccagccaggaggaagcacctggagaagatgaagacagtgagagcgatagtgatgat
gacgatgatgatgttcgtgtcactattggagatatcaaaacaggagcgccacagtacacg
ggatatggaggaactccagtgaatctcaacataaagtcagctggcagcagagcttatgga
gctggtgccaaagtgaagggtgtagatcttgaagctcctggtagcatcaatggagttcca
gtcctggaagcggacatggagtcctttgaggagaaaccatggaggaagccaggtgcggac
ttgtcggactattttaactatggttttaatgaggacacgtggaaagcatactgtgaaaag
cagaagaggttgcgtatgggtcttgacgttctcaacatcggatccaccaccagcaagatc
tcagttcagcagggtcgcacaggtaacaatgagaaggagatcacaataccagctcatgca
tctaaagcagaatttacctccccatccaacctgtataaaacaggtctcaaccaagggagg
atatcccctccacactgggcagggcctccctctcaggacttgtcctattatacgaagaca
cctgggaccatagatgtgattggtggacagaccgccactatcagcagggtggaagggcga
cgccgtcacaatctggaggggaataacatacaggtgatctctgaacactccagctctgag
gtggaacccgaggtgcagaagatgcctcctcctttctttcctcctggtccgcttcctccg
aacatcccacctccacctttcctccctcctcctgtcagtcaggctccgcctctgatcccg
cctcatcggatgcccatcactgttcctccacccaattttcctccacccactggaggacct
cctccttcacttattcctacaatggacaacagtgggcacccaggaggatatgatggacgc
cccgtcgctccatacccgtttcctacaggtggctttcctccacctatgcagggagctgtt
aacccctggcctggtctgatggagaatcccaaacagtgggattattacccccgacgagac
aaagagagggaaaaagagcgagaaagagagagacagagagaccgcggccacgagagagac
cacagccccaacgcagggccttataacagcatggccatgtgcagcgatgaagagcgctac
cgctcttaccgtgactatggagaccgaggatatgagaggcatcgggagcgagcgagccgg
gagaaagaggagcgccacagagagaggagacacagagagaaagaggagggcaggcacaag
tcatcacggagcagtagcagacggagacatgagagcgaggagggagacagtcaccggcgc
cacaaacacaagaagtccaagaggagcaaagagggcaaagagcccagcgaggagcgatcc
gctgaccaggagaaccaggaggccatggagtaa
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