Danio rerio (zebrafish): 450057
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Entry
450057 CDS
T01004
Symbol
exosc9
Name
(RefSeq) exosome complex component RRP45
KO
K03678
exosome complex component RRP45
Organism
dre
Danio rerio (zebrafish)
Pathway
dre03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
450057 (exosc9)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dre03019
]
450057 (exosc9)
Messenger RNA biogenesis [BR:
dre03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
450057 (exosc9)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
450057
NCBI-ProteinID:
NP_001006077
ZFIN:
ZDB-GENE-041010-180
Ensembl:
ENSDARG00000006392
UniProt:
Q5XJQ5
LinkDB
All DBs
Position
1:20597439..20606125
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AA seq
393 aa
AA seq
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MRDTPLSNCERLFLLKAIKEKKRLDGRQTYDYRNIKISFGTDYGCCVVELGKTRVLSQVS
CELVPPKDSRPTEGIVFFNLELSPMASPAFEPNRQSELLVTLNRQLERCLRNSKCIDTES
LCVVSGEKVWQIRVDVHVLNHDGNLMDAASIAAISALSHFRRPDVAIQGRDVTVFGPEER
DPIPLSIYHMPICVSFAFFLQGSFLLVDPCEREERVKDGLLVIAMNKHREICSIQSSGGI
MLLKEQVLRCSKIASVKVSEITELINKALENDKKVRKEGGKFGFAESMPKERITTLKRDE
APVEMTDVKETADDIVQRTETTTETVPSPILVATGTAQIGEGIVNSWGLDEDEDDELQTE
DRKTDEVVVITDSEEEEVVILNDQKSKKTSKQK
NT seq
1182 nt
NT seq
+upstream
nt +downstream
nt
atgagggatactccgctgtcaaactgcgagaggcttttccttcttaaagctataaaggag
aaaaaacgcttagatgggagacagacatacgattaccggaatattaaaatcagttttgga
accgattatggctgctgcgtcgttgagctcggaaaaacaagggtattgagtcaggtatcc
tgtgagcttgtacctccaaaagattcacgccccactgaaggcatcgtgttttttaatctg
gaactgtctcctatggcatcaccagcctttgaaccaaacaggcagtcagagttattggtg
acattaaacagacaactggagaggtgcctgaggaattcaaaatgcatagacacagaatct
ctctgtgtagtttcaggagaaaaggtttggcaaatacgggttgatgtccatgtgttaaat
cacgatggtaacttgatggatgcggcaagcattgctgccatatctgcactttcacatttt
aggaggccagatgttgctattcagggacgagatgttactgtgttcggtccagaggagaga
gatcctattccactcagcatttatcacatgcccatatgtgtcagctttgctttcttcctg
cagggctcttttttgcttgtggacccttgtgaacgagaagagcgagtaaaagatggatta
ttggtgatagccatgaacaaacacagagagatctgctccattcagtccagtggagggatc
atgctactgaaagaacaggttttaagatgcagcaaaatagcaagtgtaaaggtttctgaa
atcacagagctcatcaacaaagcgctagagaatgacaagaaagtcagaaaggagggagga
aagtttggctttgctgagtccatgcccaaagagcgaattacaacacttaagagagatgaa
gccccggtggagatgacggatgtcaaagagactgctgacgacattgtgcagagaaccgaa
actaccacagaaactgtaccttctcctattcttgttgccactggaactgcacagatcggt
gagggcatcgtgaactcatggggacttgatgaggatgaagatgatgaacttcagacagag
gacagaaaaacagatgaggtggtggtgatcacagacagtgaagaagaggaagttgtcatt
cttaatgaccagaaatccaagaacacttctaagcagaaatga
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