Danio rerio (zebrafish): 541386
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Entry
541386 CDS
T01004
Symbol
xpc
Name
(RefSeq) DNA repair protein complementing XP-C cells
KO
K10838
xeroderma pigmentosum group C-complementing protein
Organism
dre
Danio rerio (zebrafish)
Pathway
dre03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
541386 (xpc)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dre03400
]
541386 (xpc)
DNA repair and recombination proteins [BR:
dre03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XPC-HR23B-CETN2 complex
541386 (xpc)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rad4
BHD_3
BHD_1
BHD_2
Motif
Other DBs
NCBI-GeneID:
541386
NCBI-ProteinID:
NP_001038675
ZFIN:
ZDB-GENE-030131-8461
Ensembl:
ENSDARG00000039754
UniProt:
Q1LVE4
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Position
8:26007990..26030951
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AA seq
879 aa
AA seq
DB search
MAKRKDTRQKSDTKKPKQIANTKSGSKTQKAKENGMETKKNLKNSKVASRRSRKVKDVLD
EVTSKYFQDSEVKTEEPEDLSDHSEERMIIEDTSLSKQVKEEEEDSEDEDDWEEVEEMAG
PLGPVDSSELALESKPVEIEIETPDMIRKRQKKEKRKAEFETYLRRMMNRFNKDLLVDTH
KVHLLCLMASGLFRNRLLCEPDLLAVALSLLPSHFTTVSLKRINNGFLEGLLKWFQATFT
LNPALPEEKEVDLRTVLEKRMGCLSARNHEEMTYLFLLVLRSLRLFCRLVLSLQPLPLKP
PPATKSKTTPSKSSSEKAQSEKSSPELKVSPGSKRPSSATAAAKEDRGGKRKKKTGGGGD
KEAAGAQKPKNSRRRSVASKVSYKEVGSEEEEEQSEEEFQPSNEDDSEDSDGAVKICRKS
KVKSRRSSKVKQEERSEEEEEEEEEEEEEKEVKKQRRKKKQGKGADEWLEVYLESSGRWV
CVDVDQGVGQPQLCSDQATLPITYVVGLDDEGFMKDLGSRYDPTWLTSSRRRRVDSEWWE
ETMELYKSPDTERGQKEDQEMQAKLLDKPLPTSVSEYKNHPLYVLKRHLLKYEALYPATA
AVLGYCRGEPVYSRDCVHTLHSRDTWLKEARTVRLGEEPYKMVLGFSNRSRKARMMSEQK
NVKDLALFGTWQTEEYQPPIAVDGKVPRNEFGNVYMFKSCMLPIGCVHVHLPNLHRVARK
LNIDCALAVTGFDYHCGFAHAVNDGYIVCEEHEEILKAAWENEQEIQQKKEQEKREKRAV
TNWTLLVKGLLIKERLKRRYGQQGLASGTGLKQGKEGGAEGLSSDEEKEGGAQSAQAPPS
LTASWPQNRKEEAEEKIVRRVSNREKRGEEKHLFPFEKV
NT seq
2640 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaaagaaaagacactcggcagaaatcggacacaaagaaaccgaagcagattgca
aacaccaaatctggatccaaaacacaaaaagccaaagaaaatggtatggagaccaaaaag
aacctcaaaaactccaaggtggcgtctcgacggtccagaaaggtgaaagatgttcttgat
gaggtcaccagcaaatacttccaggacagcgaggttaaaactgaagagccagaggacctg
agtgaccacagtgaggagaggatgatcattgaggatacttcactatcaaaacaggtcaaa
gaagaggaggaagacagtgaggatgaggacgactgggaggaagtggaagagatggccgga
ccgctgggtcctgtggactcatcagaactagcacttgagtcgaaacctgtggagattgag
attgagactccagacatgatccgcaaaaggcagaaaaaagagaagaggaaagcagagttt
gaaacgtatctgcggcgaatgatgaatcgctttaacaaggacctactggtggatacacat
aaggttcacctcctgtgcttaatggccagtggtttgtttagaaacagactcctctgtgag
cctgacctgttggctgtggccttgtcattactaccttcccactttaccacagtatcctta
aaacgcataaacaacggcttcctggaggggctactcaaatggtttcaggcgacattcaca
ttaaatcccgccttgcctgaggagaaggaggtggatttgaggactgtgctggaaaagcga
atgggctgtttatcagcgaggaaccatgaggagatgacctatctgttcttattggtgttg
cggtcattacgtctcttctgtcggttggtgctgtcactgcaaccccttcctctgaagccg
ccgcctgccactaagagtaagaccaccccttccaagagctcttctgaaaaagctcagtct
gagaaatcctccccagagcttaaggtatcacccggatctaaacggccatcatctgccact
gctgcagcgaaagaggacaggggtggaaagagaaagaaaaagacaggaggaggaggagac
aaagaagcagcaggggcccagaaacccaaaaacagcagaagaagaagtgtagcttcaaag
gtgtcgtataaagaagtcggcagtgaggaagaggaggagcagagtgaagaagagtttcag
ccgagcaatgaggatgacagtgaagactctgatggagccgtgaaaatatgcaggaaatcc
aaagtgaaaagcagaagatcaagcaaagtcaaacaggaggagagaagcgaagaggaggag
gaggaagaagaggaagaagaagaagagaaagaggtgaagaaacaaagacgtaaaaaaaag
caagggaaaggtgcggatgagtggctggaggtgtatttggagagcagcggccggtgggtg
tgtgtagatgtggatcagggtgtcgggcagccgcagctctgctctgatcaagccactctt
cccatcacttatgtggttgggttggatgacgagggcttcatgaaggatcttggcagcagg
tatgaccccacgtggctgacatcgtcacggcgacgacgagttgactccgagtggtgggag
gagactatggagctctacaagtctccggatactgaaagaggacagaaggaggatcaggag
atgcaggcaaagttactggacaagccattgccaacatccgtctcagaatacaaaaaccat
ccgctgtatgtactgaagaggcacctgctgaagtacgaggctctttatcctgctacagct
gctgtcctgggctactgcagaggagagcctgtttattcacgagactgtgtgcacacactc
cattctagagacacctggctgaaggaagcaagaacagttcgactcggagaagagccatac
aagatggtgcttggtttttccaaccgttcccgtaaagccaggatgatgtcggagcagaaa
aatgtcaaggatctggctctttttggaacgtggcaaactgaagagtatcaacctccgatt
gctgtagatggcaaagtaccacgcaatgagttcgggaacgtgtacatgtttaagtcgtgc
atgttgcccataggatgtgttcacgtgcatctgccaaacctgcacagagtggctcggaaa
ctgaacatagactgcgctttagcagtgaccggttttgattaccattgtggatttgcccat
gcagtaaatgacggctatatcgtctgtgaagaacacgaagaaatcctgaaagcagcctgg
gaaaacgagcaagaaattcagcagaagaaagaacaggagaagcgagagaagcgtgctgtg
accaactggactctgctggttaaaggcctgctaataaaagagaggctgaagcgtcgctat
gggcagcagggcctggcatcagggacggggcttaagcaaggaaaagaaggcggggctgaa
ggactgtcctctgatgaggagaaagagggcggggctcagagcgctcaagctccaccctct
ctgactgcctcatggccacagaaccgaaaagaggaagcagaggaaaagatcgtaagacgt
gtatctaaccgagagaaacgcggagaggagaaacatctcttcccttttgaaaaagtctga
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