Danio rerio (zebrafish): 541556
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Entry
541556 CDS
T01004
Symbol
rbm39b
Name
(RefSeq) RNA-binding protein 39b
KO
K13091
RNA-binding protein 23/39
Organism
dre
Danio rerio (zebrafish)
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dre03041
]
541556 (rbm39b)
Spliceosome [BR:
dre03041
]
Common components
Common spliceosomal components
General mRNP proteins
541556 (rbm39b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RBM39linker
RRM_occluded
RRM_5
RRM_7
RRM_8
Motif
Other DBs
NCBI-GeneID:
541556
NCBI-ProteinID:
NP_001014392
ZFIN:
ZDB-GENE-050327-97
Ensembl:
ENSDARG00000041853
UniProt:
Q58ER0
LinkDB
All DBs
Position
8:complement(37231755..37249820)
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AA seq
539 aa
AA seq
DB search
MADDFDVEAMLEAPYRKGESKSSSANGHNEERSKKKRRSHSRSPSPGRRRSRSGGRKKSR
ERRRSRSRERKPSRSKERKRSRSRSKDRGGRSRGRKSPFMGQKLNGGPGGKTGPQHFPKH
SRKRSRSKSPFKKEKSPFKKDKSPFKKDKSPVRQPIDNLSPEERDARTVFCMQLAARIRP
RDLEDFFSAVGKVRDVRMISDRNSRRSKGIAYVEFVDSTSVPLAIGLTGQRVLGVPIIVQ
ASQAEKNRAAAMASMLQRGGAGPMRLYVGSLHFNITEDMLRGIFEPFGKIEGIQLMMDSE
TGRSKGYGFISFADAECAKKALEQLNGFELAGRPMKVGHVTERSDASSASSFLDNDELER
TGIDLGTTGRLQLMARLAEGTGLQIPAAAKQALQMSGSVSFGNMPNASATPPLIPNPGMN
QAMNLPTQPLATHCLQLSNMFNPQMENEPGWDIEIRDDVIEECRKHGGVIHIYVDKNSAQ
GNVYVKCPTIPVAMAVVSSLHGRWFAGKMITAAYVPLPTYHNLFPDAATATEVLRPMNR
NT seq
1620 nt
NT seq
+upstream
nt +downstream
nt
atggcagacgacttcgacgttgaggccatgctagaagctccttataggaagggtgaaagc
aagtcatctagcgccaatggtcacaatgaggaacgcagcaagaagaaaagacgcagccat
agtcgaagtccaagcccaggccgaaggaggagtagaagcgggggtcgcaaaaagagcaga
gagcgccgcaggagtcgcagccgtgagcggaagccttcacggagcaaagagcgaaaacgt
tcacgatcccgcagtaaggatcgcggtggacgtagccgtggacgcaaaagcccttttatg
gggcagaaattaaatggtggtcctggagggaagaccggcccacaacattttcccaaacac
agtcgaaaacggtctcggagcaaaagcccatttaagaaggagaaaagcccattcaagaag
gacaaaagcccattcaagaaggacaaaagccctgtcaggcagccgatagataatctgagc
cctgaggagagagatgcccgtacggtgttctgcatgcagctcgctgccagaattcgaccc
agagatctggaagacttcttctcagcagtaggaaaagtccgtgacgtcaggatgatatca
gatagaaattctcggaggtcgaaaggcattgcctacgttgagtttgtggattcaacatca
gtcccactagcaatcggcctcacaggacagagggtgcttggagtgcctatcatagtccag
gcctcacaggctgagaagaacagagcagcagccatggccagcatgctccagagaggtggc
gcagggcccatgcggttgtatgtgggttcgctgcactttaacataaccgaggacatgctc
aggggtatttttgagccctttggaaagattgagggcatccagctaatgatggacagtgag
actggcaggtcaaaaggatacggcttcatatcatttgcagatgcagaatgtgctaaaaaa
gccctggagcagctaaatggctttgagcttgcggggcggccaatgaaggtgggtcatgtt
actgagcgatcagatgcctcttcagcaagctcattcttggacaatgatgagctggagaga
actggcattgacttgggcacgacaggtcgtctacagctgatggcaagacttgcagaaggt
acaggactacagattcctgccgctgctaagcaagccttacagatgagtggctctgtgtca
tttggaaatatgccaaatgcttcagcaacacctcctcttattcccaatcctgggatgaac
caagctatgaaccttccaacccagccactggccacacactgtttacagctctccaacatg
ttcaatccacagatggaaaatgaacctggctgggacattgagataagagatgatgtcatt
gaagaatgcaggaaacacggaggtgtaattcacatatatgtcgacaaaaactctgctcaa
ggtaatgtttatgtaaaatgtccaactatcccagtagcaatggctgttgtcagctctctt
cacgggcggtggtttgcaggtaaaatgatcacagcagcctacgtgcccctccccacctac
cataacctgtttccagatgctgccacagccacggaggtcctgaggcccatgaaccggtga
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