KEGG   Danio rerio (zebrafish): 550134
Entry
550134            CDS       T01004                                 
Symbol
ubb
Name
(RefSeq) polyubiquitin-B
  KO
K08770  ubiquitin B/C
Organism
dre  Danio rerio (zebrafish)
Pathway
dre03320  PPAR signaling pathway
dre04120  Ubiquitin mediated proteolysis
dre04137  Mitophagy - animal
dre04140  Autophagy - animal
Brite
KEGG Orthology (KO) [BR:dre00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    550134 (ubb)
 09140 Cellular Processes
  09141 Transport and catabolism
   04140 Autophagy - animal
    550134 (ubb)
   04137 Mitophagy - animal
    550134 (ubb)
 09150 Organismal Systems
  09152 Endocrine system
   03320 PPAR signaling pathway
    550134 (ubb)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:dre04121]
    550134 (ubb)
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:dre04147]
    550134 (ubb)
Ubiquitin system [BR:dre04121]
 Ubiquitins and ubiquitin-like proteins
  Ubiquitins
   550134 (ubb)
Exosome [BR:dre04147]
 Exosomal proteins
  Exosomal proteins of breast milk
   550134 (ubb)
  Exosomal proteins of other body fluids (saliva and urine)
   550134 (ubb)
  Exosomal proteins of colorectal cancer cells
   550134 (ubb)
  Exosomal proteins of bladder cancer cells
   550134 (ubb)
SSDB
Motif
Pfam: ubiquitin Rad60-SLD Ubiquitin_2 DUF2604 Rad60-SLD_2 TBK1_ULD Ubiquitin_5
Other DBs
NCBI-GeneID: 550134
NCBI-ProteinID: XP_073807363
ZFIN: ZDB-GENE-050411-10
Ensembl: ENSDARG00000093313
UniProt: A0AC58JLL9
LinkDB
Position
5:42900243..42904108
AA seq 534 aa
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT
ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR
LRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL
SDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQ
QRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIE
NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGSD
NT seq 1605 nt   +upstreamnt  +downstreamnt
atgcagatctttgtcaaaacccttactggtaagaccatcaccctcgaggtagagccaagt
gacaccattgagaacgtcaaggccaaaatccaagacaaagaaggcattccccctgaccag
cagaggttgatctttgctggcaaacagctagaagatggccgcaccctgtccgactacaac
atccagaaagagtccaccttgcatctggtgctgcgtcttagaggaggcatgcagatcttt
gtaaaaaccttgacaggaaagaccatcaccctcgaggtagagccaagcgacaccattgag
aatgtcaaggccaaaatccaagacaaagaaggcattccccctgaccagcagaggttgatc
tttgctggcaaacagctagaagatggacgcaccctgtccgactacaacatccagaaagag
tccaccttgcatctggtgttgcgtctcaggggaggcatgcagatcttcgttaagaccttg
acaggaaagaccatcaccctcgaggtagagccaagtgacaccattgagaacgtcaaggcc
aaaatccaagacaaagaaggcattccccctgaccagcagaggttgatctttgctggcaaa
cagctagaagatggacgcaccctgtccgactacaacatccagaaagagtccaccttgcat
ctggtgctgcgtcttagaggaggcatgcagatctttgtaaaaaccttgacaggaaagacc
atcaccctcgaggtagagccaagcgacaccattgagaatgtcaaggccaaaatccaagac
aaagaaggcattccccctgaccagcagaggttgatctttgctggcaaacagctagaagat
ggacgcaccctgtccgactacaacatccagaaagagtccaccttgcatctggtgttgcgt
ctcaggggaggcatgcagatcttcgttaagaccttgacaggaaagaccatcaccctcgag
gtagagccaagtgacaccattgagaacgtcaaggccaaaatccaagacaaagaaggcatt
ccccctgaccagcagaggttgatctttgctggcaaacagctagaagatggccgcaccctg
tccgactacaacatccagaaagagtccaccttgcatctggtgctgcgtcttagaggaggc
atgcagatctttgtaaaaaccttgacaggaaagaccatcaccctcgaggtagagccaagc
gacaccattgagaacgtcaaggccaaaatccaggacaaagaaggcattccccctgaccag
cagaggttgatctttgctggcaaacagctagaagatggccgcaccctgtccgactacaac
atccagaaagagtccaccttgcatctggtgctgcgtcttagaggaggcatgcagatcttt
gtaaaaaccttgacaggaaagaccatcaccctcgaggtagagccaagcgacaccattgag
aatgtcaaggccaaaatccaggacaaagaaggcattccccctgaccagcagaggttgatc
tttgctggtaaacagctagaagatggccgcaccttgtctgattacaacatccagaaagag
tctactttgcaccttgtgctgcgtctccgaggaggctcagattag

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