Danio rerio (zebrafish): 550328
Help
Entry
550328 CDS
T01004
Symbol
prkN
Name
(RefSeq) E3 ubiquitin-protein ligase parkin
KO
K04556
parkin [EC:
2.3.2.31
]
Organism
dre
Danio rerio (zebrafish)
Pathway
dre04120
Ubiquitin mediated proteolysis
dre04137
Mitophagy - animal
dre04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
550328 (prkN)
04120 Ubiquitin mediated proteolysis
550328 (prkN)
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
550328 (prkN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
dre04131
]
550328 (prkN)
04121 Ubiquitin system [BR:
dre04121
]
550328 (prkN)
03029 Mitochondrial biogenesis [BR:
dre03029
]
550328 (prkN)
Enzymes [BR:
dre01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.31 RBR-type E3 ubiquitin transferase
550328 (prkN)
Membrane trafficking [BR:
dre04131
]
Autophagy
Mitophagy
PINK1-Parkin associated proteins
550328 (prkN)
Aggrephagy
Other aggrephagy associated proteins
550328 (prkN)
Xenophagy
Other xenophagy associated proteins
550328 (prkN)
Ubiquitin system [BR:
dre04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
RBR proteins
550328 (prkN)
Mitochondrial biogenesis [BR:
dre03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-dependent mechanism factors
550328 (prkN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_14
zf-RING_12
IBR_2
ubiquitin
IBR_1
IBR
Rcat_RNF216
Rad60-SLD
ADAMTS_CR_3
Dsc3_N
Rad60-SLD_2
Ubiquitin_5
Motif
Other DBs
NCBI-GeneID:
550328
NCBI-ProteinID:
NP_001410636
ZFIN:
ZDB-GENE-050417-109
Ensembl:
ENSDARG00000021555
UniProt:
A0AB13ABF7
LinkDB
All DBs
Position
13:complement(3296587..>3459604)
Genome browser
AA seq
458 aa
AA seq
DB search
MIVFVRFNSSHGFPVELEQGASVSELKEAVGRLQGVQSDQLRVIFAGRELCNESTLQGCD
LPEQSTVHVVLPPSTSAHRSELIQQRRLGSGMESLTRLDLSSSRQTTASEGLAVILETEA
SRREDTAGHTGAKAHSSFYVFCKTVCKAIQPGKLRVRCKDCKQGTLTLSRGPSCWDDVLL
PNRIHGVCQSQGCNGRLAEFYLKCASHPTCDNDTSVALDLIMPNTRRVPCIACTDIMTPV
LVFQCAERHVICLECFHLYCVSRLNERQFTQEPLLGYSLPCAAGCPDSLIKEVHHFHVLG
EEQYERYQRYAAEECVLQMGGVLCPAPGCGAGLLPPDEERRVCCEPGNNELGCGFVFCRD
CKEEFHEGPCRHTTSTASAGALQGYVVDEEAALRARWEQASQETITKTTHPCPKCQVPVE
KNGGCMHMVCPRPQCKFEWCWLCRVEWNRDCMGNHWFE
NT seq
1377 nt
NT seq
+upstream
nt +downstream
nt
atgatcgttttcgtgcggtttaattccagccatgggttcccggtggagttggagcagggt
gcgagtgtgtctgagctgaaggaggcggtgggtcgtttacagggcgttcagtccgatcag
ctgcgggtcatctttgctggacgagagctctgcaatgaatccacacttcagggctgtgat
ctcccggagcagagcacggttcatgtggtcctgcccccgtccacctctgcccaccgctca
gagctcatccagcagcgcagactgggcagcgggatggagagcctgacccgactcgacctc
agcagctcccgtcagactaccgcatccgaaggcctggccgtcatcctggagactgaagca
tccagacgagaggacaccgctggacacacaggagccaaagcccacagcagtttctatgtg
ttttgtaagacggtctgtaaggccatccagcctggaaaactgcgtgttcggtgcaaagac
tgcaaacagggcaccctgactctcagcagggggccgagctgctgggacgacgtccttctc
ccaaaccggattcacggagtgtgtcagtcacaaggctgtaatggcagactggcggagttc
tacctgaaatgtgcttcccaccccacatgtgataatgacacttcagtggcactggatctg
atcatgcccaacacacgcagagtgccctgcatcgcctgcacagacatcatgactccagtg
ctggtgttccagtgtgccgagcgtcatgtgatctgcctggagtgtttccacctgtactgt
gtgagccgactcaacgagcggcagttcacccaggagccgctgctgggttactctctgccc
tgcgcagctggctgtcctgattcgctcattaaagaggttcatcatttccgtgtcctggga
gaggagcagtatgagcgctaccagcggtatgcggcggaggagtgtgttcttcagatggga
ggcgttctgtgtcctgctccgggatgtggtgctggtctgctccctccggatgaagagcgg
agagtctgctgtgagccggggaataatggactcggctgtgggtttgtgttttgcagagac
tgtaaagaggagtttcacgagggtccctgcagacacacaaccagcacagcatcagcagga
gccctgcagggttatgttgtagatgaagaagcggctcttcgtgctcgatgggaacaggcc
tcacaggagaccatcaccaaaaccactcacccctgccccaaatgccaagttcctgtggag
aaaaacggtggctgtatgcacatggtgtgtccgcgtccgcagtgtaagttcgagtggtgc
tggctgtgtcgcgtggagtggaacagggactgtatgggaaaccattggttcgaatga
DBGET
integrated database retrieval system
