KEGG   Danio rerio (zebrafish): 550335
Entry
550335            CDS       T01004                                 
Symbol
xndc1
Name
(RefSeq) protein XNDC1N
  KO
K10803  DNA-repair protein XRCC1
Organism
dre  Danio rerio (zebrafish)
Pathway
dre03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:dre00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    550335 (xndc1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:dre03400]
    550335 (xndc1)
DNA repair and recombination proteins [BR:dre03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Short Patch-BER factors
     550335 (xndc1)
SSDB
Motif
Pfam: XRCC1_N zf-C2HC_2 Rad50_zn_hook Zn-C2H2_12
Other DBs
NCBI-GeneID: 550335
NCBI-ProteinID: NP_001017642
ZFIN: ZDB-GENE-050417-120
Ensembl: ENSDARG00000032263
UniProt: Q568L6
LinkDB
Position
21:33381348..33398676
AA seq 403 aa
MAPVKIKHIVSFTSQDSRNGVCNLCDGSDSSRPWLCSVQDRTGVLRVELQMEKVSAIGFI
DVGNYGSAFIQVDVGRSSWSSDHPFVTLLPTATLMSPADSKQGTGRQNVRMFKKADFLSR
AAEESWDRMRVTCTQPFNKHTQFGLSFLRIRTVEDDTEDSSEQQEDTPENLRTPEKMSSV
MEWLSSPAVQNTFFGRITGDGSSEAQRNAGSLSRAERMVKAAQLKRRSLSTSPCSTASST
TPQREDNSKSPPGGFTTSGELVKTPQEQRRKPKARQILLNSDTPLKRSRPTGSTHDHPTS
PKLPRSQAEARQKPIDAQDSPETSCPLCGESFSPDYLPFHASTCLDSDPSGLVGLMSSSV
FGSAADEHMVPCPLCSISFPPDRIQQHASTCGDTREPSAVWLN
NT seq 1212 nt   +upstreamnt  +downstreamnt
atggctcccgtcaaaataaaacacatcgtctcgtttacatcacaggatagcaggaacggt
gtgtgtaatctgtgtgatggcagtgacagcagcaggccatggttgtgcagtgttcaggac
cgcactggagtcctcagagtggagctgcagatggagaaagtgtctgctattggattcatt
gatgttggaaactatggctctgcgttcattcaggttgatgtaggccgctcatcttggtca
tcagatcatccatttgtcactctgctgcccactgcaacactcatgagtccagccgactcc
aaacagggcacgggacgccaaaatgtgcgcatgtttaaaaaagctgattttctttctcgg
gctgctgaggagagctgggacagactgcgagtcacctgcactcagcctttcaataaacac
gcacagtttggtctgtcctttctgcgcatccgcaccgtagaagatgacactgaagattca
tcagagcaacaagaagatactcctgaaaatctgcgcacaccagaaaagatgtcatccgtg
atggagtggttttccagtcccgctgtccaaaacacgttttttgggcgaatcacaggggac
ggctcctcagaagcccagaggaatgctgggagtttgagtcgggccgagcgaatggtcaaa
gctgctcagttaaagagacgctcattgtcaacttctccatgcagcactgcgtccagcaca
acccctcagagagaagataactccaaaagcccaccaggtggatttacgacatctggtgaa
ctggttaagacccctcaagagcaaaggaggaagcctaaagcacggcagatccttttaaac
agtgatactccattaaaaagatccagacccacaggatccacacatgatcatcccatctca
ccaaaattacctagaagccaggcagaagccagacagaagccaatagacgcacaggactct
cctgagaccagctgtcctctttgtggagaatctttcagtccagattacctcccctttcat
gcctccacctgtctggattcagatccagcagggctcgtgggactcatgagctcttctgtt
tttggctcagctgcagatgagcatatggttccatgtcctctttgctccatctcattcccc
ccagaccgcatccagcagcacgccagcacctgcttagacacccgagagcccagcgctgtc
tggctgaactga

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