KEGG   Danio rerio (zebrafish): 550448
Entry
550448            CDS       T01004                                 
Symbol
sde2
Name
(RefSeq) splicing regulator SDE2
  KO
K25059  replication stress response regulator SDE2
Organism
dre  Danio rerio (zebrafish)
Brite
KEGG Orthology (KO) [BR:dre00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:dre03041]
    550448 (sde2)
   03032 DNA replication proteins [BR:dre03032]
    550448 (sde2)
   03400 DNA repair and recombination proteins [BR:dre03400]
    550448 (sde2)
Spliceosome [BR:dre03041]
 Complex C
  Other components
   Complex C specific factors
    550448 (sde2)
DNA replication proteins [BR:dre03032]
 Eukaryotic type
  DNA Replication Termination Factors
   Other termination factors
    550448 (sde2)
DNA repair and recombination proteins [BR:dre03400]
 Eukaryotic type
  Check point factors
   Other check point factors
    550448 (sde2)
SSDB
Motif
Pfam: SDE2 SDE2_2C Sde2_N_Ubi_vert Rad60-SLD ARGLU Exonuc_VII_L DUF948
Other DBs
NCBI-GeneID: 550448
NCBI-ProteinID: NP_001017752
ZFIN: ZDB-GENE-050417-270
Ensembl: ENSDARG00000024124
UniProt: Q7T293
LinkDB
Position
22:complement(26276973..26289520)
AA seq 467 aa
MELFVISPDLKFNNLTVAPDSTVSDLIDHFTVKNGVSLTDFYVSSNGRLSRSNDLLQSGV
VYRLEPRLCGGKGGFGSMLRALGAQIEKTTNREACRDLSGRRLRDVNHEKEMAEWLKKQA
DREAEKEQRRLERIQRKLAEPKHYFTDTNYEQQCHDLSERLEDSVLKGMQASSSGLVQAD
EGPSLKRANPTDSKKKAKKKCYWTGMAGLEEMASSSEGSDDSDSEVSPSTSGASCSSGFP
KPVVSAHKADPQEQPSSSSPAQRKHNQEELQKRDKEECTSEISSSSSSPAANNEKLNQEE
TNEISSSSSSPAPKPTEVNQQEMETEMECTAQISSSSSSPAEHSEEEVQQTAERVEKMAE
EVQKTAEEVQKKTEESTAEISPSSSIPEEKSQVLSQVEDPLDLLSVSGPEQLEALGLERL
KKELMERGMKCGGTLQERAARLFSVKGLTPDQIDPSLLAKPSKGKKK
NT seq 1404 nt   +upstreamnt  +downstreamnt
atggagctgtttgtaatttcgccagatttgaagtttaataatcttactgtcgctccggac
tcgactgtcagcgaccttatcgatcattttaccgttaaaaatggtgtatctttgacggat
ttctacgtgagcagtaatggccgtttgtctcgcagtaatgacctgcttcagtctggagtt
gtgtatcgtctggagccccggctgtgtggaggaaaaggaggattcggctccatgttgaga
gctctcggtgcgcaaattgaaaagaccacaaatcgtgaggcctgccgagatctgagtgga
agaagacttcgagacgtcaatcatgagaaagaaatggcggaatggttgaaaaagcaggcg
gatcgagaggcggagaaggagcagcgtcgcctggagcggattcagaggaaactggctgag
cccaaacattatttcacagacaccaattatgagcagcagtgccatgacctctcagagaga
ctggaggactctgtgctcaaaggcatgcaggcttcctctagcggtctcgttcaggcggac
gagggtccgagcctcaagcgcgcaaatccaacagacagtaaaaagaaagccaagaagaaa
tgttactggaccggcatggcagggctagaggaaatggccagctctagtgaaggaagtgat
gacagcgacagtgaagtctctccgtctacctctggagcttcctgtagttctggttttcct
aaaccagtcgtttcagctcataaagcagacccccaggagcagccctcttcctcaagtccc
gcacagagaaaacacaaccaggaggagctgcagaaacgggacaaggaggagtgtacaagt
gaaatcagcagctcttcctccagtcctgctgcaaacaatgaaaaactcaaccaggaggag
accaatgaaatcagcagctcctcctccagtcctgctccaaagcctacagaagtcaaccag
caggagatggagactgagatggagtgtacagctcaaatcagcagctcgtcttcaagtcct
gctgaacacagcgaggaggaggtgcagcagacggctgagagggtggagaagatggctgag
gaggtgcagaagacggctgaagaggtgcagaagaaaactgaggagtctacagctgaaatc
agcccaagcagcagcatccctgaggagaaatcacaggttctttcacaggttgaggatccg
ctggatctgctctctgtgagtgggccggagcagctggaggctttgggtctggagaggctg
aagaaggagctgatggagagagggatgaagtgtggaggaacactgcaggaacgagctgcg
cgtctgttttctgttaaaggactgacccctgatcagattgatccttcactcttggccaaa
cccagcaagggcaagaagaaatag

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