Danio rerio (zebrafish): 553029
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Entry
553029 CDS
T01004
Symbol
rad50
Name
(RefSeq) DNA repair protein RAD50
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
dre
Danio rerio (zebrafish)
Pathway
dre03440
Homologous recombination
dre03450
Non-homologous end-joining
dre04218
Cellular senescence
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
553029 (rad50)
03450 Non-homologous end-joining
553029 (rad50)
09140 Cellular Processes
09143 Cell growth and death
04218 Cellular senescence
553029 (rad50)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dre03032
]
553029 (rad50)
03400 DNA repair and recombination proteins [BR:
dre03400
]
553029 (rad50)
DNA replication proteins [BR:
dre03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
553029 (rad50)
DNA repair and recombination proteins [BR:
dre03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
553029 (rad50)
BRCA1-C complex
553029 (rad50)
NHEJ (non-homologous end-joining)
MRX complex
553029 (rad50)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
Rad50_zn_hook
AAA_21
AAA_15
SbcC_Walker_B
SMC_N
Intein_splicing
AAA_29
zf-met
AAA_13
AAA_22
AAA_16
Motif
Other DBs
NCBI-GeneID:
553029
NCBI-ProteinID:
XP_696859
ZFIN:
ZDB-GENE-050506-110
Ensembl:
ENSDARG00000038917
UniProt:
A0A8N7UW22
LinkDB
All DBs
Position
21:complement(44438361..44488181)
Genome browser
AA seq
1312 aa
AA seq
DB search
MSKIEKMSILGVRSFGVEDKDKQVISFFSPLTVLVGPNGAGKTTIIECLKYITSGDFPPG
SKGNTFVHDPKDAHETDVRAQIRLQFRDVNGDAVAVQRSMQCTQKGKKTEFKTLEGVITR
IKHGEKVSLSSKCAEIDREMISSLGVSRAVLNHVIFCHQEESNWPLSEGKALKQKFDEIF
SATRYIKVLETLRTLRQKQTNTVKSCQMELKYLKQNKDKAQEIRELLSTKETQLASSKES
VNRIEGQIDPLERRLNDIESSLGKVMKLDNDIKALDSRKKQMEDDNRELEEKMEQVFQGS
DDQLQDMYQNHQRTVKEKEKRLVECQRELERAGRECQRMNRIKSELLVEQGRLQLEADRH
TQNIKKRDTQVKTLASFLELEGYDRTPLSERQLQSFYRQIKERLDQDSEALNQTMHDMQQ
KETQKQHNIDDLRDKKTGLERTIELKKDLQAKKQQELKNIKSDLQKLEGSSNRLQELDTE
LQKAERELDNAVQACTVDSLKVEVTELLKEKAQLDQAQRKLDQEMEMLNTHTTARAQMDM
MKKTKMDKEEQVRKIKSRHNEELVSLLGHFPNKKELEDWIYSKSREIKSTREQITKMNKE
LASGEQKKSHYTAEIKRKEEQLAKYEERLFNVCGSQDFQSDLSKLEDELEKCSKQRAMLA
GATAVYSQFISQLTEEGDPCCPVCQRVFPSEAELQDVINDMQSKLRLVPDKLKNTEHDLK
RKERRRDEMMTLKPIRQSLVELQEKELPELRNQLQRVNRDIEKLKGDIEEQETLLCTLVS
EEETAKACLQDISLMDRFQLDLKDVERKIAQHAAKLQGVDLSRTMQQVSQEKQETQHRLD
TTSSKIELKRKLIQDQQEQIQALRSSVNEIRGEKLQISSNMQKRQQLEEQCVEFSTEIQT
LHRDIRDAKEQASPLAATLEKLQQEKQDLVERRRKKQEEGQEKINAIKEKMKNITLFEKE
ITKYIEEGKDSYKEQKETELQEMDKQLHEAEKQREKTNKDMGNIRQDIDTQKVQERWLQD
NLTLRKRVEELKEVSRKREALIKEMGNMQVLQLRNERREVERKLEDLKKNRSVALGRQKG
YEDEILRFRKELNEDQYCRAEDLYRDKMIVMRTTELANKDLDIYYKALDQTIMRFHSMKM
EEINKIIRDLWRSTYRGQDIEYVEIRSDVDENASAGVKRRTYNYRVVMVKGDAALDMRGR
CSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDRENIESLAHALVEIIKSRSRQR
NFQLLVITHDEDFVELLGRSNYVEHFYRIRKNQDQCSEISKCSINSLNSYLH
NT seq
3939 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaagattgagaagatgagtattctgggagtgaggagttttggagtggaggataaa
gataaacaagtgatctccttcttcagccctctcacggtgcttgtgggacctaatggagct
ggcaaaacgaccatcattgagtgtctcaagtacatcacatcaggagactttccaccagga
agtaaaggaaacacttttgtccatgatcccaaagatgctcatgagactgatgtacgggca
cagatcagactccagtttagagatgtgaatggagatgctgtggctgtgcaaagatctatg
cagtgcacacagaaaggcaagaaaacagaattcaaaacgcttgagggcgtcattacgaga
ataaagcatggtgagaaagtaagcctgagctctaaatgtgctgagatagaccgtgagatg
atctcttccctgggcgtctccagagctgttctcaaccatgtcatcttttgccaccaagaa
gagtccaactggcctctcagtgaagggaaagccctcaagcagaagtttgatgagattttc
tcagccacaaggtacattaaggtgctggagaccttgcggacgctgaggcagaagcagacc
aacactgttaaatcctgccagatggagctcaagtacctgaaacagaacaaagataaagcc
caagagattcgagagctgctttccaccaaagaaactcagctagcttcctccaaagagagt
gtcaatcgcatcgagggtcagattgaccctctggagagacgactaaatgacatagaaagc
agcctcggcaaagtgatgaaattggacaacgacatcaaagctctggacagtaggaagaaa
cagatggaggatgataaccgggagctagaggaaaagatggaacaggtgtttcagggctca
gatgatcagctacaggacatgtatcagaatcaccagcgcaccgtgaaagagaaggaaaaa
agacttgtagagtgccaacgtgagcttgaaagggctggtcgagaatgccagaggatgaac
cgcatcaagtctgagctgctagtggagcaaggtcgtctgcagttggaggcagatagacac
acacagaacattaaaaagagagacacccaggtaaagactttggcgtctttcctggagttg
gagggctatgatcgaacgccacttagtgagcgacaactccaaagcttttacagacaaatc
aaagaaagactggaccaggactcggaagccctcaaccaaactatgcatgacatgcagcag
aaagagacccagaaacagcacaacattgatgatctccgggataaaaagacaggtctagag
agaaccattgagctaaagaaagacctacaggccaaaaagcaacaagaactgaagaatatc
aagtctgaccttcaaaaactggagggctcctccaacagactgcaagagctggacactgag
cttcagaaagcggagcgtgagcttgataatgctgtgcaggcctgtacagtggacagtctg
aaggtcgaggtaactgaactactgaaggaaaaggctcaactggatcaggcacagcgcaaa
ctggaccaagagatggaaatgctcaacacacacaccacggcacgtgcacagatggacatg
atgaagaaaaccaagatggacaaagaggagcaggtgaggaagatcaagtcgagacataat
gaagagctggtgtctctgctgggacactttccaaacaagaaagagctggaggactggatc
tactccaaatccagagagatcaaatccactagagagcagatcaccaaaatgaataaagag
cttgcatctggagaacagaagaagagtcattacactgcagaaatcaaacgaaaagaagag
cagctggccaaatatgaagagagactttttaatgtttgtggaagccaggatttccagtca
gacttaagcaaactggaggatgagttggaaaagtgctccaaacagagagccatgttggca
ggtgccacagctgtgtacagtcagttcatcagtcagctgacggaggaaggtgacccatgc
tgccccgtatgtcagcgcgtgttcccatcagaggcggagctccaggacgtcattaatgac
atgcagtccaaactgcggcttgtcccagacaagctgaagaatacggagcatgacttgaag
aggaaggagcgcagacgtgatgaaatgatgacactgaagcccatcaggcagtccttagtg
gagctccaagagaaagagctaccagagttaagaaatcaactccagcgtgtgaatcgggac
attgagaaactgaaaggagacatcgaggagcaggagacattgctgtgcacgctggtgtct
gaggaggagacagccaaagcctgtctgcaggacatctctctcatggatcgctttcagctt
gatctaaaggatgtagagaggaagattgctcaacatgcagccaagttgcagggagttgac
ctcagtcgcaccatgcagcaggtcagccaggagaaacaggagactcaacaccgcctggac
actacttccagtaagatcgagctaaagaggaaactaattcaggaccagcaggagcagatc
caggccttgaggagcagtgtgaacgagattcgtggagaaaagctgcagatctccagcaac
atgcagaagcgtcagcagttggaggagcagtgtgtggagttctccaccgagatccagaca
ctccacagggacattcgagatgcaaaggagcaggcctctcctctagctgctactttggag
aagctccagcaggagaaacaggacctcgttgagcgcaggaggaaaaaacaggaggaagga
caggaaaagataaatgcgattaaggaaaaaatgaaaaacatcaccctctttgaaaaagag
atcaccaagtacattgaagagggcaaagacagctacaaagagcaaaaagaaactgaacta
caggagatggacaaacaactacatgaggccgaaaaacagcgggagaagaccaataaagac
atgggcaacatccgacaagacattgacactcagaaggttcaagagcgctggctgcaggac
aacttgactctacgaaagcgcgtggaggagctgaaagaggtgtccagaaaacgagaggcc
ttaattaaggaaatgggcaacatgcaagtcctgcagctgcgcaatgagcgacgagaagta
gagcgaaagttggaggacctaaaaaagaaccgcagtgtggcgcttggtcgacagaaaggc
tacgaggatgagatcctccgctttcgtaaagaactcaatgaggatcaatattgccgggcc
gaggatctctacagagacaaaatgattgtgatgagaacaacagagctggccaataaagac
ctggacatctactataaagccctagaccaaacaataatgaggtttcacagcatgaagatg
gaggagattaataaaatcatcagagatttgtggcggagcacatacagaggacaagacatc
gagtatgtagagattcgctctgatgtggatgagaatgcatctgctggtgtgaagagaagg
acctataactatagagtggtaatggtgaaaggagacgcagccttggacatgcggggtcga
tgcagtgctggacaaaaggttctcgcctctcttataatccgattggctctagctgagaca
ttctgcctgaactgtgggattctggcactggatgagcccactaccaacttagacagggag
aatatagagtctttggcacatgcacttgtggaaattatcaaaagtcgctctcgtcagcgc
aacttccagctgcttgtcatcactcatgacgaggatttcgtggagctcctgggaagatcc
aactatgtggagcatttctacaggatcaggaagaaccaggatcagtgctcagagatcagc
aaatgcagtatcaacagcctcaactcctacctgcactga
DBGET
integrated database retrieval system
