KEGG   Danio rerio (zebrafish): 553213
Entry
553213            CDS       T01004                                 
Symbol
ift140
Name
(RefSeq) intraflagellar transport protein 140 homolog isoform X1
  KO
K19672  intraflagellar transport protein 140
Organism
dre  Danio rerio (zebrafish)
Brite
KEGG Orthology (KO) [BR:dre00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   03037 Cilium and associated proteins [BR:dre03037]
    553213 (ift140)
Cilium and associated proteins [BR:dre03037]
 Primary cilia and associated proteins
  Intraflagellar transport (IFT) complex A
   553213 (ift140)
SSDB
Motif
Pfam: TPR_IF140-IFT172 Beta-prop_IFT140_1st Beta-prop_IFT140_2nd TPR_IF140_C Beta-prop_EML_2 WD40_WDHD1_1st Beta-prop_RIG_2nd WD40_CDC20-Fz Beta-prop_WDR19_1st Beta-prop_HPS5 tRNA_int_end_N2 WD40_Prp19 ANAPC4_WD40 WDR55 Beta-prop_WDR90_POC16_2nd WD40 Beta-prop_EML TPR_GEMI5 TPR_COPA_B TPR_IFT80_172 Beta-prop_CAF1B_HIR1 Clathrin Consortin_N WD40_MABP1-WDR62_1st Beta-prop_WDR75_1st Beta-prop_WDR35_TULP_N Beta-prop_ELP1_2nd
Other DBs
NCBI-GeneID: 553213
NCBI-ProteinID: XP_021329488
ZFIN: ZDB-GENE-040724-165
Ensembl: ENSDARG00000031886
UniProt: A0A8M9PXA0
LinkDB
Position
24:41490024..41565605
AA seq 1458 aa
MAVYFDHRAEAPDSSGVPVLISWHSSVCVLAVGSVNPSTGGCVDLYLQQGEHVELCHVER
GFSPSLLQWHPNKPLLAVGWETGETILLSHPSGEHTPLPNNSHTACITVLEWSSNGSRLV
TGDQAGVMAVWKVDARGKLQGSPLIKHDYSRPLTCCIFRPPPPAEDVAMLARAAVSGDEN
ALDMFNWKKSSKGAAFALGSQEGLAFYISTADGSVYSVDEQVKSVPLLSVESAVHKMWYS
KRRSALAVVTDSLQLSQFSLGPEGFAQEISKVKLSGRGGPNADVVWTESGLLITASGELH
IRLWDVELDDHYALSLDESLGFEKGELLNCVSFCTSKQVLAAGTSRGRVALWHMLTVSDQ
KGDSKTQWKLQTPAEVEGNISQLQWGSSAHLLAVCSSSSVVILSEHVMCSHYSQQMAAVQ
LTPTQLSLANFTSNTHITFNTDTHIRAVQLTKNMVAVWNGKMITVYEPSGQTLHSTGSFQ
CESPALALHEENIYTIEPNRVQIRTPQGTVKQLLVFSEAEGNPTLLSVCGSYLAVGTDTC
HIRVFDLTRREAKPLGVTKNLSELISDLGALRSVKCNASGSQISVLITQINGRPDNRVYF
YDIELDTLSYFDFFTGRPQSSPEQSEDSQRSRCEEELAARCPVSQFWDENEPRLFVCETV
SVNSDLHGSRQRQTEKEDVMVVTFFVTQEHGLLLQDSQPKPAALLGLLALDTPYYYYICK
LLFRRGCVVLPYLGESGDQGSVVSSSSAQGSSSPQMVVRQALRDFVGLEGCEKQTRDAML
NFSFYLTIGDMDEAFKAIKLIKSEAVWENMARMCVKSRRLDVARVCLGNMGNARAARALR
DAEKEPEVEAQVAVLATQLGMLEDAEQLYKSCGRFDLLNKFYQAAGQWQQAVETAETHDR
IHLRTTYYSYAKHLEAMGDKNLALVYFEKSDTHRFEVPRMLMEDNVSLEIYINKMKDKDL
YKWWGHYLESQSDMEAALHYYDLAQDYLSQVRVHCYLGSIQKASEIANETGNRAASYHVA
RQYEGQDEISQSVHFYTRAQAYNNAIRLCKENNLDDQLMNLALLSNPEDMMDTAMYYEEK
GTHMDRAVMLYHKAGHVSKALELAFATEQFGALQLIAEDLNEASDPALLARCSDFFIKHA
QYQKAVELLVAAKKYHEALQLCLDQSLTITEDLAESLTVPKDSTLLSEAGRKELLEKIAD
CCMRQGNYHLATKKYTQAGNKIKAMRALLKSGDTEKIVFFAGVSRQKEIYVMAANYLQSL
DWRNDAEIMKNIISFYTKGRALELLAGFYEACAEVEIDDYQNYEKAYGALTEACKCLTKA
KGRSGEEADGKLLILTHRLGLIKRFIQARRMHEEDPVEAVRLCESLLEEKDLDLAVRVGD
VYGFLVEHYCHHGNFTQAWSKIEELRSTHPKINLSMYVSQTSLEALQNAAGIRLVYKDTN
THAADDDEEVEEDENINH
NT seq 4377 nt   +upstreamnt  +downstreamnt
atggctgtgtattttgatcaccgagcggaggctcctgacagcagtggagtgccggtcctc
atctcatggcattccagtgtgtgtgtgctggccgtgggctctgtgaacccctctactggg
ggctgtgtggatctttacctgcagcagggtgaacatgtcgagctgtgtcatgtagaacgg
ggattcagcccctcgcttctgcagtggcacccaaataaacccctgctggcggtggggtgg
gagacgggtgagaccatcctcctctcacacccgtccggtgaacacacacccctgcccaac
aactcacacactgcctgcatcacagtgctggagtggagcagtaacggcagcagactggtc
accggagatcaggctggtgtgatggcggtgtggaaggtggacgctcgagggaaactgcag
ggatctcctctgattaaacatgactacagtaggccgctgacctgctgcatcttcagacct
ccaccacctgctgaggatgtagcgatgctggcccgtgctgctgtaagcggggatgaaaat
gctctggacatgtttaactggaagaagagcagtaaaggagcagcgtttgcactgggatct
caggaaggacttgctttttacatcagcacagcagatgggagtgtgtacagtgtggatgag
caggtgaagagtgtgcctttgctgtcagttgagagcgctgtacataagatgtggtactcc
aagagaagatccgctctcgctgtggttacagactcactgcagctttcacagttcagtctc
ggaccagaaggcttcgctcaggagatcagcaaggtgaagctgagtggcagaggagggccg
aatgcagacgttgtgtggacagaaagcggtttgcttatcacagcatcaggagaactccac
atcaggttgtgggatgtggagctggatgatcattacgctctatcactggatgaatctctg
ggctttgagaaaggagaactgctcaactgtgtttctttttgcacttctaaacaagttctt
gcagcaggcaccagcaggggtcgagttgctctgtggcacatgctgacggtgagcgatcag
aaaggagactccaaaactcagtggaaactccagacaccagcagaagtggaaggaaacatc
tcacagctacagtggggttccagcgctcatctgttggccgtgtgtagcagcagtagtgtg
gtgatcctgtcggagcatgtgatgtgttctcattacagccagcagatggcagcagtgcag
ctcacaccaactcaactcagcctggccaacttcaccagcaacacacacatcaccttcaac
acagacacacacatcagagccgtgcagctcaccaagaatatggtagcggtgtggaatggg
aaaatgatcaccgtttatgagccttcaggacaaacgttacacagcacaggctcattccag
tgtgagtctcctgctcttgcgctgcatgaagaaaacatttatactatagaaccaaaccgt
gtccagatccgcacaccacagggcaccgtgaagcagttgttggtgttttctgaagcggaa
ggaaacccgactctactgagtgtctgtggatcttacctggctgtgggaacagatacctgt
cacatcagggtctttgacctcactcgcagggaggccaaacccctgggtgtcacaaagaac
ctgtcagagctcatttctgacctgggtgctctgagatcagtcaaatgcaacgccagcgga
agccagattagtgtcctcattacacagataaacggacggccagataacagggtgtatttc
tatgacatcgagctggacacgttgtcttactttgacttcttcacggggaggccacagagc
agccctgaacagtctgaggacagtcagagaagtcgttgtgaagaggagctggccgctcga
tgccctgtttctcagttctgggatgagaacgagcctcgtctgtttgtgtgtgaaaccgtg
tctgtgaactctgacctccacggcagcaggcaaagacaaacagagaaggaggatgtgatg
gtggtgacgttctttgtgacgcaggaacacggtctcctcctgcaggactcacagcctaaa
cctgcagcactgcttggtctgctggctctggatacaccatactactattatatctgcaag
ctcttatttcgaaggggatgcgtcgttctcccctatctgggtgagagtggcgatcagggg
tctgtggtctcctccagctcggcccaggggtcttcatctcctcagatggtggtgcgacaa
gctcttcgagactttgttgggctggagggctgtgagaagcagacccgagacgccatgctg
aacttcagcttctacctcaccataggagacatggatgaagcctttaaagccatcaaactc
atcaagagtgaggcagtgtgggagaacatggctcgtatgtgtgtaaaaagtcgtcgtctg
gacgtggctcgtgtgtgtctgggcaacatggggaatgcacgggcagctcgagctctcaga
gatgctgaaaaagagccggaggtggaggcgcaggtggctgttctggctacacaactcggc
atgctggaggatgcagagcagttgtataagtcatgcgggaggtttgatttactcaacaag
ttttatcaagcggcgggtcagtggcagcaggcggtggagacggcagaaacacacgaccgc
attcacctccgcaccacttactacagctacgccaaacacctggaggccatgggggacaag
aacctggcgctggtgtattttgagaagtcggacacacatcggtttgaagttccacgaatg
ttaatggaggataacgtttcactggagatttacatcaataaaatgaaggacaaggatctg
tataagtggtggggtcattatctagagagccaatcagacatggaggctgcgctgcattat
tacgacttagctcaggattacttgtctcaagtgcgcgtgcactgctacctgggaagcatt
caaaaggcgagtgaaattgccaatgaaactggtaacagagcagcatcttatcatgttgca
cggcaatacgagggacaggatgaaatcagccaatcggtgcacttctatacacgcgcacaa
gcctataataacgccatacgactgtgtaaagagaacaacctggatgaccagcttatgaat
ctggcgctgcttagcaatccagaggacatgatggacacggccatgtattatgaagagaaa
ggaacgcatatggaccgagctgttatgctttatcataaggcaggtcatgtctccaaggct
ctggaactagcttttgcaactgaacagtttggagccttgcagctgatcgcagaggaccta
aatgaagccagcgaccctgcattattagcacgctgctcggatttcttcataaaacacgct
cagtaccagaaagctgtggaattgctggtggctgccaaaaagtaccatgaggcgctccag
ttgtgtttggaccagagtttgaccatcacagaagatctggctgaaagtctgacagtgccg
aaagactcaactcttctgtctgaggccgggaggaaagagctgctggagaaaatcgcagat
tgttgcatgcgacagggaaactaccacctagccacaaagaaatacacacaagctggaaac
aagatcaaggcgatgcgagcgctgctgaaatcaggagatacagagaaaatagtctttttc
gctggcgtttccagacagaaggagatttatgtaatggcagccaattacctgcagtcactg
gactggaggaacgacgcggagatcatgaagaacatcattagcttctacacaaaaggacgg
gcgctcgagctgctcgctggtttctatgaggcctgtgccgaggtggaaattgacgattat
cagaattatgagaaggcgtacggcgctctgactgaggcatgtaaatgtttaaccaaagca
aaaggccgcagtggagaagaagctgacggcaagctgctcatactgactcacagactcgga
cttatcaagaggttcattcaggcacgaagaatgcatgaggaggatccagtagaagcagtg
cgtttgtgcgagtctctgctggaagagaaggatctggatctggcagtgcgtgttggagat
gtgtacggcttcctggtggaacactactgccatcatggcaacttcacgcaggcatggagt
aaaatagaggaattgagatcaacacatcccaaaataaacctgagcatgtatgtgagtcaa
accagtctggaggctttacaaaatgctgctgggatccgcctggtctacaaagataccaac
actcatgctgctgacgatgatgaagaggtggaggaagatgaaaacatcaatcattga

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