Danio rerio (zebrafish): 553347
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Entry
553347 CDS
T01004
Symbol
polr2a
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
dre
Danio rerio (zebrafish)
Pathway
dre03020
RNA polymerase
dre03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
553347 (polr2a)
09124 Replication and repair
03420 Nucleotide excision repair
553347 (polr2a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dre03021
]
553347 (polr2a)
03400 DNA repair and recombination proteins [BR:
dre03400
]
553347 (polr2a)
Enzymes [BR:
dre01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
553347 (polr2a)
Transcription machinery [BR:
dre03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
553347 (polr2a)
DNA repair and recombination proteins [BR:
dre03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
553347 (polr2a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_R
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
553347
NCBI-ProteinID:
XP_005156282
ZFIN:
ZDB-GENE-041008-78
Ensembl:
ENSDARG00000099966
UniProt:
A0A0R4IMS9
LinkDB
All DBs
Position
12:22560131..22573297
Genome browser
AA seq
1965 aa
AA seq
DB search
MHGPPSSDSACPLRLIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQ
GVIERSGRCQTCAGNMTECPGHFGHIELAKPVFHVGFITKIMKVLRCVCFFCSKLLVDAN
NPKIKDILTKSKGQPRKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPESEDITKEKGHGG
CGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRIADEEDIILGMDPKYA
RPEWMIVTVLPVPPLAVRPAVVMQGSARNQDDLTHKLADIVKINNQLKRNEQSGAAAHVI
AEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSIKQRLKGKEGRVRGNLMGKRVDFSA
RTVITPDPNLQIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDN
GDRIDLRFHPKPSDLHLQIGYKVERHMCDGDIIVFNRQPTLHKMSMMGHRVRILPWSTFR
LNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLT
AVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINAI
RTHSTHPDEEDSGPYKNISPGDTKVIVENGELIMGILCKKSLGTSAGSLVHISYLEMGHD
ITRLFYSNIQTVVNNWLLIEGHSIGIGDSIADKATYQDIQNTIKKAKQDVIEVIEKAHNN
ELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVAGSKGSKINISQ
VIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGG
REGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGEAVEF
QNMATLKPSHKAFEKKFKFDYANERALRRTLQEDVVKDVMTNAHVQSSLEREFEKMREDR
EILRAIFPTGDSKVVLPCNLARMIWNAQKIFRINPRAPTDLNPARVVDGVKELSKKLVIV
NGDDQLSRQAQENATLLFNIHLRSTLCSKRMTEEFRLSTEAFDWLLGEIETKFNQSIAHP
GEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKRPKTPSLTVFL
LGQAARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQNTVVTEDQEWVNVYYEMPDFD
VTRISPWLLRIELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMN
SDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIIT
EDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELY
HVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGINRQDTGPLMKCSFEETVDVLMEAS
SHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGISVAGPTGMFF
GSAPSPMSGMSPAMTPWNTGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSPGYSP
AWSPTPGSPGSPGPASPYIPSPGALSPNYSPTSPAYEPRSPGGGYTPQSPGYSPTSPSYS
PTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP
SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP
TSPSYSPTSPNYTPTSPSYSPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPS
YSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSPT
SPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPTYTPTSPKYSPTSPTYSPTSPKY
SPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSPAISPDDSDEENN
NT seq
5898 nt
NT seq
+upstream
nt +downstream
nt
atgcacggaccgccttccagcgacagcgcatgcccattgcgcctcatcaagagagtgcaa
ttcggcgtcctcagcccagatgaacttaaacggatgtccgttaccgaagggggcatcaag
taccctgagaccacagaaggaggacgccctaaactggggggactcatggacccccggcaa
ggggttattgaaagatcaggcagatgccagacatgtgcaggtaacatgactgagtgccct
ggtcattttggccacattgagctggccaagccggtctttcatgttggcttcatcacaaag
atcatgaaggtcctccgctgtgtgtgtttcttctgttcaaagctgcttgtggatgcgaac
aatccaaaaatcaaagacatcctgacaaagtctaaggggcagcctcgcaagcgtctgacc
cacgtctatgacctctgtaaaggcaaaaacatttgcgagggtggagaggagatggacaac
aagtttggagttgagcagcccgagtcagaggacatcaccaaagagaagggtcatggaggc
tgtggcaggtaccaaccacgcatccgtcgctctggcctggagttgtatgctgaatggaag
catgtgaatgaagactctcaggagaaaaagattctcctcagccctgaacgtgtgcatgag
atctttaagcgcattgcagatgaagaggacataatcctgggcatggaccccaaatacgcc
cgtcccgagtggatgattgtcacagtgttgcctgttccccctctagctgtcagaccggct
gtggtcatgcagggctctgctaggaaccaggatgatttaacacacaagttggctgacatt
gtcaagatcaataaccagctgaagcgaaatgagcagagtggagcagcagctcatgttata
gcagaggatgtcaagctgcttcagtttcacgtggccaccatggtggacaatgaactgcca
ggtctacctagggcaatgcaaaagtctggtcggccactgaagtccatcaagcaaaggcta
aagggtaaagaaggacgtgtcagaggtaatttgatggggaagcgtgtggacttctctgcc
cgaactgtcatcacgcctgatcctaacctgcagattgaccaggtgggagtaccccgttct
attgcagcaaacatgacctttcctgagatcgtcacaccctttaacattgacagacttcaa
gagcttgtgaggagaggtaacagtcagtaccctggagccaaatatattatccgagacaac
ggggacagaattgacctccgattccaccctaaaccaagtgaccttcatcttcagatagga
tacaaagttgagaggcacatgtgtgatggggacatcattgtgttcaacagacagcctacg
ctccacaaaatgtctatgatgggccatagagttcgaatcttgccttggtcaacatttcga
ctcaacctcagtgtgacgaccccatacaatgctgactttgacggcgatgaaatgaacctg
cacttgccacagtctctggagacccgtgctgagatccaggagctggccatggtgcctcgt
atgattgtcacaccacagtccaacagacctgtcatgggtattgtgcaggacacactgaca
gctgtgcgcaagttcaccaagagagatgtcttcttagagaggggtgaggtgatgaatctc
ctcatgtttctctctacatgggatggcaaagtgccccaaccagccatcttgaagcctcgt
cccctctggaccggcaaacagatctttagcttgattatccctggccacatcaatgccatc
cgcacacacagcactcatcctgatgaagaggacagtggcccttacaagaacatctcccct
ggagacacaaaggtaattgtggagaacggtgagctgatcatggggatcctgtgtaagaaa
tcgttgggaacctcagctggatcacttgtccatatctcataccttgagatgggccatgac
atcacaagactcttctattccaacatccagactgtggttaacaactggctcctcattgaa
ggtcactctattggtattggagactccattgctgataaggcgacatatcaggacattcag
aacactatcaagaaagccaaacaggatgtgatagaggtcattgaaaaagcccacaacaat
gagctggagcctactccaggtaacactttgagacagacctttgagaaccaggttaatcgc
attctaaatgatgctcgagacaaaactggatcctctgcccagaagtccctgtcagagtac
aacaatttcaaatccatggtggtggctggttcaaaagggtccaaaattaacatttctcag
gttattgctgtggtgggtcagcagaacgttgagggtaagcgaattccctttggtttcaaa
catcgcacactccctcacttcatcaaagacgactacggtcctgagagtagaggctttgtg
gagaactcttatctggccggtctcacaccaactgagtttttctttcacgccatgggaggc
agagaaggtctgattgatacagctgtcaaaactgctgagacaggttatattcagcgtcgt
ctaatcaagtctatggagtctgtaatggtgaagtacgatgcaacagtcagaaactccatt
aaccaggttgtccagctgaggtatggagaggatgggcttgcaggagaggctgtggagttt
caaaatatggccactcttaagccatcgcacaaagcctttgaaaagaagttcaagtttgac
tacgccaatgaacgagctctccgccgcactcttcaggaagatgtggtgaaagatgtgatg
accaatgctcatgtccagagttctctagagagagagtttgagaagatgagggaagaccga
gagatcttgagggccattttccccacaggagacagcaaggtggtcctaccgtgcaatctg
gccagaatgatctggaatgctcagaagattttccgcattaaccctcgggcaccaactgat
ctcaacccagcacgggttgtggacggagttaaggagttgagtaagaagctggtgattgta
aatggcgatgaccagttaagcaggcaagcccaggagaacgccactctgcttttcaacatc
catctgcgatcaaccctctgttccaaacgaatgactgaggagttccgtcttagcactgag
gcctttgattggctgctgggagagattgagaccaaatttaaccaatccattgctcaccca
ggtgagatggtaggtgctctggctgcccagtccctgggagagcctgctactcagatgacc
ctgaacacattccactacgccggtgtgtccgccaaaaacgtcactctcggtgtgcctcgt
ctcaaagagcttatcaacatctccaagcgacccaagaccccctccctgactgtctttcta
ctgggccaagcagcccgtgatgcagagagggccaaagatatcctgtgtcggttggagcac
acaaccctgcgcaaggtcactgccaacacagccatttattatgaccccaaccctcagaac
actgtggtgactgaggatcaagagtgggttaacgtctactatgagatgcctgacttcgat
gtgacccgaatttcaccctggctgttgcgtattgaacttgaccgcaaacacatgactgac
cgtaagctgactatggagcaaattgcagaaaagatcaatgcaggatttggtgacgactta
aactgcatcttcaatgatgacaatgctgagaaactggtactgcgaatccgcatcatgaac
agcgacgagaacaagttccaagaggatgaggaggttgtagataagatggacgatgatgtc
ttccttcgatgcattgaatccaacatgctgacagacatgaccctgcaaggcattgagcag
atcagcaaggtgtacatgcatcttccccagacggacaacaaaaagaaaatcatcatcaca
gaagatggagagtttaaagccctgcaggagtggatcctggaaacagatggagtcagtctc
atgagggtccttagtgaaaaggatgtggaccctgttcggaccacctccaacgacattgtg
gagattttcactgttcttggtattgaggcagtgcgtaaggctctggaaagagagttgtac
catgtcatctcttttgatggttcttacgttaactaccgccatcttgccttgctgtgtgac
acaatgacctgcaggggtcacttgatggctatcactcgtcatggtatcaataggcaggac
actggaccactaatgaagtgctcttttgaggagacggtggacgtgttgatggaagcctct
tcccatggtgaatctgatccaatgaaaggagtatctgaaaacatcatgctcggtcaactg
gctcctgcaggcactggttgctttgacctgctgttggatgctgagaaatgcaaatatggc
atggagatccccactaacattcctggaatcagtgttgcaggacccacaggcatgttcttt
ggctctgcccccagcccgatgagtggcatgtctcctgccatgaccccctggaatacagga
gctactcctgcatatggtgcctggtctcccagtgttggaagtggaatgacacctggagct
gcaggcttttctccaagtgctgcatctgatgccagcggcttctcacctggatattctcct
gcctggtcccctactcctggctctccaggatcgcctggaccagctagcccatatattcca
tcaccaggagccttgtctcccaactactctccaacctctcctgcttatgagcctcgttct
cctggtggtggatacaccccacagagccctggttattctccgacttctccatcttactct
ccaacttcaccatcttattctcccaccagcccgaactacagcccaacatctccgtcctac
tctcctacatcaccttcctattctccaacatcgccgtcttattctccaacatctccaagc
tactctccgacttcaccttcttattctccgacttcaccatcctattcgccaacttcacca
tcctattcaccaacatctcctagttatagccccacatcccccagctacagcccaacctca
ccaagttacagccccacatctccatcttattctcctacctctccatcttattccccaacc
tccccatcttactctcccacctccccaagctactctccaacctccccttcctattcccca
acatctccaagctacagtcccacttcacccaactacacacccacctcccccagttattcc
ccaacctctccatcttacagccctacctcaccttcctactcccccacctctcccaattac
acacccaccagccccaactattcccccacttctccttcatattctcccacttctccatcc
tactctccatccagtcctcgctacaccccacagtctcccacctacaccccaagctcacct
tcctacagcccgagctctccatcctattcccctacatctccaaaatacacacccacctct
ccctcctacagtcccagttctccagagtatactccaacatcccccaaatattcccctact
tctccaaagtactctcctacatcgcccaaatacagtcccacctctccaacctactcccca
actacgcccaagtacagccccacttccccaacttattctccaacctctcctacctacacc
ccaaccagtcccaaatactcccctacctctccaacttactctccaacttcaccgaaatac
tctcccacttcccccacttactctcccactagtcccaagggctccacttacagccccact
tctcctggctacagccccacctctccaacctacagccctgccatcagcccagatgacagt
gatgaagaaaataactaa
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