Danio rerio (zebrafish): 553405
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Entry
553405 CDS
T01004
Symbol
polE
Name
(RefSeq) DNA polymerase epsilon catalytic subunit A
KO
K02324
DNA polymerase epsilon subunit 1 [EC:
2.7.7.7
]
Organism
dre
Danio rerio (zebrafish)
Pathway
dre03030
DNA replication
dre03410
Base excision repair
dre03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
553405 (polE)
03410 Base excision repair
553405 (polE)
03420 Nucleotide excision repair
553405 (polE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dre03032
]
553405 (polE)
03400 DNA repair and recombination proteins [BR:
dre03400
]
553405 (polE)
Enzymes [BR:
dre01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
553405 (polE)
DNA replication proteins [BR:
dre03032
]
Eukaryotic type
DNA Replication Elongation Factors
DNA polymerase epsilon complex
553405 (polE)
DNA repair and recombination proteins [BR:
dre03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
DNA polymerase epsilon complex
553405 (polE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF1744
POL2_thumb
DNA_pol_B_exo1
zf_DPOE_2
zf-DPOE
DNA_pol_B
DNA_pol_B_exo2
RNase_H_2
CENP-B_dimeris
Sigma70_ner
Spidroin_N
Motif
Other DBs
NCBI-GeneID:
553405
NCBI-ProteinID:
NP_001121995
ZFIN:
ZDB-GENE-070705-557
Ensembl:
ENSDARG00000058533
UniProt:
B0V351
LinkDB
All DBs
Position
5:13425220..13482928
Genome browser
AA seq
2284 aa
AA seq
DB search
MVLQNSGRYKADRGGDQDNQQDDASALSAVKRLERSQFTDSMDERFGFERMKEPGEKTGW
LINMHPTEILDDDKRMISAVDYYFIQEDGNRFKVALPYKPYFYIATKKNTEREVISFLSK
KFQGKVAKLESVPKEDLDLPNHLVGLKRNYIKLSFNTVDDLIKVKREISPAVRKNREREK
SNDAYTSMLSSALVGGSVVTEDEGGSSKKMTEQLDNILDMREYDVPYHVRVSIDLKIHVA
HWYNVRYRGSAYPPEIVRRDDLVERPDPVVLAFDIETTKLPLKFPDAETDQIMMISYMID
GQGFLITNREIVSEDIEDFEFTPKPEYEGPFTIFNEPDEASLIQRWFEHVHETKPNIFVT
YNGDFFDWPFVEARAAQLGLSMHREIGFQKDNQGEYKASQAIHMDCLRWVKRDSYLPVGS
HNLKAAAKAKLGYDPVELDPEEMCRMATEEPQTLATYSVSDAVATYYLYMKYVHPFIFAL
CTIIPMEPDEVLRKGSGTLCEALLMVQAYHVNIVFPNKQEQVFNKLTDDGHVLDSETYVG
GHVEALESGVFRSDIPCRFKMNPAAFDFLIQRVERTLRHAIEEEEKIPLEQVTNFNEVCD
EIKRKLISLKEVPNRIECPLIYHLDVGAMYPNIILTNRLQPSAMVDEATCAACDFNKPGA
NCQRRMTWQWRGEIMPASRSEFHRIQQQLESEKFPPVFPNGPPRAFHELNREEQARHEKK
RLGDYCRKAYKKVHLTRLEERVTTICQRENSFYVDTVRAFRDRRYEFKGLHKVWKKKLST
AQDNGDAAEVKRCKNMEILYESLQLAHKCILNSFYGYVMRKGARWYSMEMAGIVCYTGAN
IITQARELIEQIGRPLELDTDGIWCVLPNTFPENFVIKSTNEKKPKVTISYPGAMLNIMV
KEGFTNHQYQELVDAASLTYETRAENSIFFEVDGPYLAMILPASKEEGKKLKKRYAVFNE
DGSLAELKGFEVKRRGELQLIKIFQSSVFEAFLKGTTLEEVYASVAKVADYWLDVLYSKA
ANMPDAELFELISENRSMSRKLEDYGEQKSTSISTAKRLAEFLGDQMVKDAGLSCRYVIS
RKPEGSPVTERAIPLAIFQAEESVKKHFLRKWLKMPSLHDLDIRSILDWSYYIERLGSAI
QKIITIPAALQQVKNPVPRVRHPDWLHKKLLEKNDIYKQKKISELFTSEGKRQVAQQTLA
AGETPDMEDLAAPQRPVQPAILISTKRKRISQGEDSQTETQEQELTQSWREILGPPPAMG
ATREEILVWLRYHKKKWELQLRQRKERRKRRRLIDGESQPTGGGVIRGGPTTGLGSFLRR
TARSILDMPWQIVQIAETSHPGLYKLWAVIGSDLHCMKLNIPRVFYVNQRVPKQEEAATC
KKVNRILPRSGVACFLYQYTVPEDMYQEHINEINADLSAPDIEGVYETQVPLLFRALVQL
GCMCMVNKHVVRDLAGREADTFDLEHLEMRSLAQFSYLEPGSVRHIYLYHHSQGHKALFG
LFIPSQRKASIFVLDTVRSNQMPNLNSLYGAERTALLEKTTEELLPPEKHLFEVRAENDI
KAIYRALQRILLNYKEERRGPTLIAVQSNWELRRLAAGMTVLEEFPVVPVHVIDEISYNV
LDWQRHGARRMIKHYLNLDSCLSQAFDMARYYHLPVGNLPQDISIFGSDLFLARHLRKHN
HLLWLSPTARPDLGGKEADDSRLVMESDERGSMEINSQGCYSTVCVELDIQSLAVNTILQ
SQHVNDMEGGASIGVSFDVIQHASLEEMMSGNQGANAVASYDETALCSNTFRILKSMVVG
WVREITQYHNVYADNQVMHFYRWLRSPSSLLYDPALHRTLLNMMKKIFLQLVAEFKRLGS
SVIYGNFNRLILCTKKRRIDDAIAYVEYITNSIHTKEIFHSLSITFSRCWEFLLWMDPAN
CGGVKGKLPSSLLYGEHDSEKKKKDGAEEDGSDDEDEHEENQEEDEEQDREEDVEDLIES
NWNIMQYLPQTASCQKYFLMIISAYIAAVYHSMRQELRRNAPGATPIKRRGATQASQQPS
GDVSALPGLITFSQEYVSSELTQNFFTITQKIQKKVSSTRSVTLPSEMFPVLPGSHLPLN
NPALEFIKYVCQVLSLDANIVNQVNKLKRDLLRLVDVGEFSEDAQFRDPCKSYVLPEVIC
HHCNFCRDLDLCKDPAVSQDGSVLPQWFCSNCQAQYDTESIEMALVEALQKKLMSYTLQD
VECAKCKGVKEANMPLYCSCAGDFNLTFTTKSFSEQVEVFRNIAAHYNMSFLLETIDWII
SMNT
NT seq
6855 nt
NT seq
+upstream
nt +downstream
nt
atggttttacaaaacagtggacgatataaagctgaccgaggtggagatcaagacaaccag
caggatgatgcgtcagctttgtctgctgtcaagcgcctggagcgcagtcagttcactgac
agtatggacgagcgtttcggctttgaacggatgaaggagcctggggagaaaacaggatgg
cttatcaacatgcacccgactgagattctggatgatgacaaacgaatgatcagtgctgtg
gactattacttcatacaggaagatggaaacagattcaaggttgctcttccctacaagcca
tatttctatattgccactaaaaagaacactgaaagagaagtgatctccttcctgtcaaag
aagttccaagggaaagtagcgaagcttgaatctgtgccaaaggaagatttagatctgcct
aaccacctggtcggactaaagaggaactacatcaaactctcttttaacactgtggatgat
cttattaaagtaaaaagagagatctcacctgctgtccgcaagaacagggagagagagaag
tctaatgatgcctatacaagcatgctgtccagcgctttggttggtgggagtgtagtgacg
gaggatgagggtggatcgtcaaaaaagatgaccgagcagctagacaacatcctagacatg
cgggaatatgatgtgccctatcacgtccgcgtttctattgacttaaagattcacgtggct
cactggtataatgtgcggtatagaggaagtgcttatcctcctgagattgtgcgcagggac
gaccttgtggaaagacctgatcctgttgtgttggcttttgatattgagaccactaaactt
cctctgaagtttcctgatgctgaaacagaccagatcatgatgatatcatacatgatagat
ggacagggtttcctcatcacaaacagagaaattgtgtctgaggacattgaagactttgag
ttcaccccaaaacctgaatatgagggccctttcactatatttaatgagcctgatgaggcc
tctctcattcagagatggtttgagcacgtccatgagaccaagccaaatatttttgtcacc
tacaacggggatttctttgactggccatttgtagaagccagagctgcccagttaggtctg
agtatgcatcgggagatcggcttccaaaaggacaatcagggagaatataaagccagccag
gctattcacatggactgcctcaggtgggtaaagagagacagttacctgcctgtaggaagt
cataacctcaaggctgcagcaaaagctaaattaggctatgaccctgtagagctggaccca
gaggagatgtgccgcatggccactgaagaaccacagaccctggccacctattcagtgtct
gacgctgtggctacatactacctctacatgaaatatgttcatcccttcatttttgccctc
tgcactattatccctatggaacctgatgaggttttgcggaaaggctccggtaccttgtgc
gaagccttgttgatggttcaggcctaccatgtcaacatcgtcttcccaaacaagcaggag
caggtctttaacaaactcacagatgatgggcatgtattggactctgagacatatgtgggc
ggccacgtcgaggctctggagtctggtgtgtttcgcagtgacatcccctgccgctttaaa
atgaatcccgcagcgtttgactttttgattcagagggtggaacgtactcttcgtcatgca
attgaggaagaggagaagattcctcttgagcaggttaccaactttaatgaggtgtgtgat
gagatcaagaggaagctggtctctttgaaggaagtgcccaacagaatcgagtgtcctctt
atttaccatcttgatgtaggggccatgtaccccaacatcatcctcaccaacagactacag
ccttctgccatggttgatgaggcgacctgtgccgcctgtgattttaataaacctggggca
aactgtcagcgcagaatgacttggcaatggagaggagagatcatgccagcaagtaggagt
gagtttcatcgcattcagcagcaactggagtccgagaagtttccccctgtttttcctaat
ggtccacctcgtgctttccatgagctcaatagagaagaacaggctcggcatgagaagaag
cgtttaggagactactgtagaaaagcctataagaaggttcacctgaccaggctggaggag
agagtcactactatctgccagagagaaaactccttttatgttgacacagttcgagccttc
agagaccgtcgatatgagtttaaaggactccacaaggtgtggaagaaaaagctgtctaca
gcacaggataatggggacgcagcggaggtgaagcgctgcaagaacatggagattctttat
gagtctcttcagctggcccacaagtgcatcctcaactccttttacggatacgtcatgaga
aaaggagcacgttggtactcaatggagatggctgggattgtttgttacaccggtgccaac
atcatcacacaggccagagaactcatcgagcagattgggaggcctctggagttggacact
gatggtatatggtgtgttcttcccaatacctttcctgagaattttgtcatcaaatccacc
aatgagaagaagccaaaggtgaccattagttatcctggagccatgctcaatattatggtc
aaggagggcttcacaaatcatcagtatcaagagttggtggacgctgcgtctcttacctat
gagaccagagctgagaacagtatcttctttgaagttgatggcccgtacttggctatgatc
ctacctgcctccaaagaagagggaaagaaactaaagaaaagatatgctgtgttcaatgag
gacggctctctggcagagctgaaggggtttgaagtgaagaggagaggagaacttcagctc
attaagatcttccagtcgtctgtgttcgaggcgttcttgaaaggcacaactctggaagag
gtttacgcctctgtggctaaagtggctgactactggcttgatgtgctctacagcaaggct
gctaacatgccagatgcagagttgtttgagctgatttcggaaaaccgttcgatgtctcgt
aaactggaagattatggtgaacagaaatccacctcgattagcaccgccaaacgtcttgct
gagtttcttggcgatcagatggtgaaggacgccggcctcagctgtcgatatgtcatctcc
cgcaaaccagagggctcgcctgtcactgagagggcaatcccgctagccatttttcaggct
gaagagagtgttaaaaagcattttctacggaaatggctgaagatgcccagtctccatgac
cttgacattagatctattctggactggagttactacattgagcgtttgggcagtgctatt
cagaaaatcatcacaatccctgcggctctacaacaagttaaaaacccagtgcccagagta
cgccatccagactggctgcacaagaaacttctggaaaagaatgacatctacaagcagaag
aagattagcgagctcttcaccagtgagggaaagagacaggtggcccaacaaactctagca
gcaggcgagactccagatatggaggatttggctgctcctcagcgccccgtgcagcctgct
atcctcatcagcacaaagaggaagaggatctctcaaggagaggacagtcagactgagact
caagagcaagaactcacacagtcttggagagaaatactgggcccaccaccggccatgggt
gccacccgggaggaaatattagtctggttgcgctaccataagaaaaaatgggagctgcag
cttcggcagagaaaggaacgtcggaagcggcggcgtttgattgatggagaatctcagccg
actggaggcggtgttattcgtgggggacccacaactgggcttggcagcttcctgcggagg
accgctcgcagtattctagacatgccttggcagattgtacagattgcagagaccagtcac
ccaggcctttataagctgtgggccgtcattggcagtgacctccactgcatgaaactcaac
atccctcgagtgttttatgtcaaccagagagtgcctaagcaagaagaggctgctacctgc
aaaaaggtgaaccggatccttcctcgctctggtgtggcgtgtttcttgtaccagtatact
gttcctgaggacatgtaccaggaacacatcaatgaaatcaatgctgacctctcggctcct
gatattgagggcgtctatgagacacaggttcctctgctgttccgggctttggtccagctg
ggctgcatgtgtatggtcaataaacatgtggtcagagacctggctggcagagaggcggat
acctttgacctggagcacctagagatgagatccttggcccagtttagctaccttgagcca
ggcagtgtaaggcacatctacctgtaccatcacagtcagggtcataaggctctctttggc
ctcttcataccatcgcaacgcaaagccagcatctttgttctggacacggtccgcagtaat
cagatgcccaacctgaactcactgtatggagccgagcgcacagcactgctggagaaaacc
acagaggagcttctgccacccgagaaacatctgtttgaagtgcgtgctgaaaatgacatc
aaagccatctaccgtgcactgcagcgcatcctcctcaactacaaggaggagcgccggggt
ccaaccctgattgctgttcagtccaactgggagctgcggcgtctggcggccggtatgact
gtactggaggagttcccggtggtgccagttcacgttatagatgagatcagctataatgta
ctggactggcaaaggcacggagctcgacgcatgattaaacactacctgaacctggacagc
tgcctttcacaggcttttgatatggccaggtattatcacctgcctgtaggaaacctgcct
caggacatttctatatttggatcggatctatttcttgcacgtcatctgagaaagcacaac
cacctgttgtggctctcacccacggcacggccggacctcgggggaaaagaggctgacgac
agcaggctggtgatggagagtgatgagagagcttccatggaaattaatagccagggctgc
tactccacagtttgtgtggagctggacattcagagtttggcggtaaacaccattctgcag
tctcagcatgtaaacgacatggagggcggagccagcattggggtcagctttgatgtcatt
cagcacgcatcgctggaggagatgatgtcagggaatcagggggcgaatgcggtggccagc
tatgacgagactgcactctgctccaacacattcaggattctgaagagtatggttgttggt
tgggttcgagagatcacacagtatcataacgtctatgctgataaccaggtgatgcatttt
tatcggtggttgcgctcacccagttctctactgtacgacccggccctgcaccgcacgctg
cttaacatgatgaagaagatctttctacaactcgtggcagagtttaaacgcttgggatca
tctgtgatctatggaaacttcaaccgtctcatcctctgcaccaagaaacgacgcattgat
gacgccattgcatatgtggagtacatcactaacagtatccacacgaaggagatcttccac
tctctgtccatcacattttcccgctgttgggagtttctgctgtggatggatcctgctaac
tgtggaggagtgaagggaaagctgccctccagccttctgtatggagagcatgacagtgaa
aagaagaagaaagatggagcagaagaggatggaagtgatgatgaagatgaacatgaagaa
aaccaagaggaagatgaagaacaggacagggaggaagacgtggaggatctgattgaaagt
aactggaacataatgcagtatcttcctcagacggcctcctgtcagaaatactttctcatg
atcatttcagcctacattgcagctgtttatcacagcatgagacaagaacttcggcgaaac
gcccctggagccactcccattaagagacgaggagcaacacaggcatcccagcagccatct
ggagatctcagtgcgcttcctggtttgattacattctcccaggagtatgtgtcaagtgaa
ctcacacagaacttcttcaccatcactcagaagattcagaagaaagtgtcgagcactcgc
agtgttacgctcccgtctgagatgttccctgttcttcctggttctcatttgccgctcaac
aaccctgcgctggagttcatcaaatacgtctgccaggttctctctctggacgccaacatt
gtcaatcaggtgaacaaactaaagcgagatcttctgcgcttggtggatgttggagagttt
tcagaagacgcccagtttcgtgacccctgcaagtcatatgtcctgccagaggtcatctgt
caccactgcaacttctgtcgagacctggacctctgtaaagaccctgcagtttcacaggat
ggttcagttcttccacagtggttctgttctaactgtcaggctcagtacgacactgagtct
atagaaatggctctggtggaggccctgcagaagaaactaatgagttacacgctgcaagat
gtggagtgtgccaaatgcaaaggagtgaaggaggcgaacatgccgctgtactgtagctgt
gctggagatttcaacctcaccttcaccacaaagagcttctctgagcaggtggaagttttc
agaaacatcgccgctcattataatatgagcttcttattggagaccattgactggatcatc
agtatgaacacatag
DBGET
integrated database retrieval system
