Danio rerio (zebrafish): 553422
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Entry
553422 CDS
T01004
Symbol
chd5
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 5 isoform X3
KO
K14435
chromodomain-helicase-DNA-binding protein 5 [EC:5.6.2.-]
Organism
dre
Danio rerio (zebrafish)
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
dre03036
]
553422 (chd5)
Chromosome and associated proteins [BR:
dre03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
553422 (chd5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
CHDCT2
CHDII_SANT-like
Helicase_C
CHDNT
DUF1087
PHD
Chromo
PHD-1st_NSD
ResIII
HDA2-3
PHDvar_NSD
HTH_Hrp3
PHD_2
DEAD
HMG_box
AAA_22
Motif
Other DBs
NCBI-GeneID:
553422
NCBI-ProteinID:
XP_003199545
ZFIN:
ZDB-GENE-120314-2
Ensembl:
ENSDARG00000105083
UniProt:
A0A8M1RSV6
LinkDB
All DBs
Position
11:complement(29574922..29650688)
Genome browser
AA seq
1996 aa
AA seq
DB search
MPGSLSNEDEGQDDMDFEDDVPDDEEGELQRSVPLSPLERFFSEEDNVKQHKKKKTSKIM
EGKEPKVKKKKKKEGLPSGLDDMSDREDHGHRSGSESSTYSALKKKKKKPREKKERKMKQ
RKKEDDEDEDDDDDGNMKEPKSSSQLMQEWGLEDVQYAFSEDDYKTITNYKAFSQFLRPL
IAKKNPKIPMSKMMTVLGAKWREFSANNPFKGTSATAVAAAVAAAVETVNVAPPICIRSI
QQISPTGPIKKAKTKEGKGPGAKKKSKPGKETKKKGKPKKSKSKAGPGGKRKKGSSSEED
FLDDFSDFDDISIHSASVRSDTSAAAKKKSSRKGRKKRKREDGDGYETDHQDYCEVCQQG
GEIILCDTCPRAYHLVCLDPELEKAPEGKWSCPHCEKEGIQWEAKDDEEEEDEVAGEEED
DHMEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCMCPPLKGKVQKIL
HWSWGDPPLPPEVPLGPDGEKVDNLAKTPLKGRPERQLFVKWAGLSYWHCSWVSELQLEL
YHTVMYRNYQRKNDMDEPPPYDYGSGEEELNNEKRRSKDPQYAAMEERFYRYGIKPEWLI
IHRILNHSFDKDGDVQYLIKWRDLPYDQCSWEADDFDVPDYDSLKQAYWDHRNQVLGENH
QPLLFRKGKRPKEEMKRREPPPDTPVVDPTIKFEQQPWYIDDTGGTLHPYQLEGLNWLRF
SWAQGTDTILADEMGLGKTVQTIVFLYSLYKEGHSKGPFLVSAPLSTIINWEREFEMWAP
DFYVVTYTGDKESRAIIRENEFTFEDSAVKSGRKVFRMKKDTPIKFHVLLTSYELITIDQ
AILGSITWACLVVDEAHRLKNNQSKFFRILNGYKIYYKLLLTGTPLQNNLEELFHLLNFL
TPERFNNLEGFLEEFADISKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELS
PMQKKYYKFILTRNFEALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVAAVEAPVLPNGS
YDGNLLVKSSGKLTLLQKMLIKLKDGGHRVLIFSQMTKMLDLLEDFLEFEGYKYERIDGG
ITGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSR
AHRIGQNKKVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKTGSMSKQELDDIL
KFGTEELFKDDVEAARTMGDNKEGEEVSVIHYDDNAISKLLDRSQDATEDTEIQNMNEYL
SSFKVAQYVVREEDGEEEVQREIIKQEENVDPDYWEKLLRHHYEQQQEDLARNLGKGKRI
RKQVNYNDASQEDQEWQDDLSDNQSEYSVGSEDEDEDFEERPEGGRRHSRRQLKSDRDKP
LPPLLARVSGNIEVLGFNARQRKAFLNAIMRWGMPPQDAFNSHWLVRDLRGKSEKEFRAY
VSLFMRHLCEPGADGAETFADGVPREGLSRQHVLTRIGVMSLVRKKVQEFEHVNGKFSTP
DRIPVGLELKKLTESVSSDPNTPVPASPVPTQPSTPVPSDKTESVSGSQEDKEIAEPENT
KPLDPEPVVPEPSPAPEKTNEGEETKNGSPEEKRLEESEKSDTPPVQSEPSANQAPPPTK
QCEQPANQTPSDCGKGKETSPERGETKPSPPKTEDKEQKPAIPDDVKSEDPPENQVNGEK
DVRDETDEGHRDDKSSIKTRFMFNIADGGFTELHTLWQNEERAAVSSGKIYDIWHRRHDY
WLLAGIVTHGYARWQDIQNDPRYAILNEPFKTEMHKGNYLEMKNKFLARRFKLLEQALVI
EEQLRRAAYLNMTQDPSHPAMALNTRFAEVECLAESHQHLSKESLAGNKPANAVLHKVLN
QLEELLSDMKADVTRLPSMLSRVPPVSARLQMSERGILSRLTSRGNEPPPQQPFPQGSFG
CSQMYNSSFAGGFRGPGGTAMVNYSQMPLGPYVSVSSNGPPAPTSLLEKKSSDVLRDVVT
PDLKSGKPSDVICIED
NT seq
5991 nt
NT seq
+upstream
nt +downstream
nt
atgcccggatcgctcagcaatgaagatgaggggcaagacgatatggattttgaggacgac
gtgccagatgatgaggaaggtgaacttcaaagaagtgtccccctgtcaccactagagaga
ttcttctctgaagaggataatgttaaacaacataagaagaagaaaaccagtaagataatg
gaaggaaaggagcccaaagttaagaaaaagaagaaaaaggaggggcttcccagcgggctg
gatgacatgtcagacagagaggatcatggccacaggtcggggagcgagagcagcacctac
agcgccctgaagaagaaaaagaagaagcccagagagaagaaagagaggaaaatgaaacag
cgaaagaaagaggatgatgaggatgaggacgatgacgatgatggaaacatgaaggaacca
aagtcgtccagtcagctaatgcaagagtggggtctcgaagatgtccagtatgccttctcg
gaggacgattataagactatcaccaactacaaagccttcagccagtttcttagacccctt
atcgccaagaagaaccccaagatccccatgtcaaaaatgatgacagtgcttggagcaaag
tggagagagtttagtgcaaacaacccgttcaaaggcacctctgcaactgctgtggcggct
gctgtggccgctgccgtggaaactgtcaatgtggctccacccatctgtattagaagtatc
caacagatctctccaactgggccaatcaaaaaagccaaaaccaaagagggaaaggggcct
ggtgctaaaaaaaagagcaagccaggaaaagaaacaaaaaagaaaggaaaaccgaagaag
tccaaatcgaaagcaggcccgggtggaaaaaggaaaaaaggctcttcgagtgaggaggat
ttcctggatgacttttcagactttgatgacatcagcattcacagtgcctctgtacgctca
gacacttcagcggcagcaaaaaagaagtcaagtcgcaaaggacgaaaaaaaagaaaaaga
gaggatggagacggctacgagacagaccatcaagactactgtgaggtttgtcagcaggga
ggagaaatcattctgtgcgacacctgtcccagagcatatcacctggtgtgtctggatcca
gagctggaaaaagcccccgagggcaaatggagctgcccccactgtgaaaaagaagggatt
cagtgggaggccaaagatgacgaagaggaggaagatgaggttgcaggtgaagaggaagat
gaccatatggaattctgcagagtgtgtaaggatggaggagagctgctgtgttgtgacaca
tgtccttcctcctaccacatccactgtctcaacccaccacttcctgagattcccaatgga
gagtggctgtgcccacgatgcatgtgtccacctctaaaaggcaaagtccagaagattctg
cattggtcgtggggcgatcctcctctgccacctgaggttccccttgggccggatggggag
aaggtggacaatctggccaaaacaccacttaaaggccgtccagagaggcagctgtttgta
aaatgggctggcctgtcctactggcactgctcctgggtcagcgaactacagttggagctg
tatcacacagtaatgtaccggaactaccagcgcaagaatgacatggatgaaccgccaccg
tacgactacggctctggggaggaggagcttaataatgagaagaggcggagcaaagaccct
cagtatgctgccatggaggagcgtttctaccgctacggcatcaagccagagtggctgatc
attcaccgcatcctcaaccacagttttgataaggatggagatgtacagtacttgataaag
tggagagatctgccgtatgatcagtgcagctgggaggctgatgacttcgacgtcccagat
tatgacagccttaaacaagcctactgggatcacagaaaccaggtgctcggtgaaaatcat
cagcccctgctgttcaggaagggaaaaagacccaaagaggaaatgaagaggagagagcct
ccaccagacactccagttgtggatcccaccatcaagtttgaacagcagccatggtacatc
gatgacactgggggaactttgcacccgtaccagcttgaaggtctgaattggttgcgcttc
tcttgggctcaaggaaccgacacaatcttggctgatgaaatgggacttggcaagactgtg
cagactatagtgttcctgtactcactctacaaagagggtcattccaaagggccgtttctg
gtcagcgcgccactttccaccatcatcaactgggagagggagtttgaaatgtgggctcca
gatttctacgtggtcacttacacgggggacaaagagagccgggctatcatacgtgaaaac
gagttcacttttgaggacagcgctgtcaaatcaggacgcaaggttttccgcatgaagaag
gacacgccaattaagtttcatgtcctgctgacatcatatgaactgatcaccattgatcag
gctatactcggctccattacctgggcctgtttggttgtggatgaagcccaccgactgaag
aataaccagtcaaagtttttcagaattctcaatggctacaaaatctactataagctgctc
ttgactggaacccctttgcagaacaatctggaagagctttttcacctgctcaacttcctc
accccggagcgcttcaataacctggagggctttctggaggagtttgcggacatctcgaaa
gaggaccagattaagaaacttcacgacctgctggggccacacatgctcaggagattgaaa
gctgatgtgtttaagaacatgccagcaaaaaccgagctcatcgtgcgagttgaactcagc
cctatgcagaagaaatactacaagtttattttaacaaggaactttgaggctttgaattcc
aaaggaggagggaaccaggtgtcccttctgaacatcatgatggacctgaagaaatgctgt
aaccatccctacctgtttccagtggctgcagtggaagctccggtgttacccaatggctct
tatgatggtaaccttctggtaaaatcctcagggaaactcaccctgcttcagaaaatgctc
ataaagctgaaagatggaggacacagggttctcatcttctctcagatgacaaagatgctg
gatttgctggaggacttcctggagttcgaggggtataaatacgagcgcattgacgggggc
atcacaggcgggctgcgacaggaggccatcgatcgctttaacgcacccggcgctcagcag
ttctgttttctgctgtccacacgtgctggaggattgggtatcaatctggcaaccgcagac
acagtaatcatatatgactctgactggaatccgcacaatgacattcaggcattcagcagg
gcgcatcgaattggtcaaaataaaaaggtgatgatctatcgctttgtaactcgggcatcc
gtagaggagcggatcacccaggtggccaagcgaaagatgatgctgacccacctggtggtg
cggcccggcttgggctccaagacgggctctatgtccaagcaagagctagacgacatcctc
aaatttggcactgaagagctttttaaagacgacgtggaggccgccagaacgatgggagac
aataaagaaggagaggaggtcagtgtgatccactatgacgataatgccatctccaaactt
ctggaccgtagtcaagatgccaccgaagacactgagatccagaacatgaacgagtacctg
agctcatttaaagtggctcagtatgtcgtgagagaagaggacggagaggaggaggtccag
agggagattattaagcaggaggagaatgttgatccagactattgggagaagctcttgagg
caccattatgagcagcagcaggaggatctggctcgaaacctgggcaaggggaaacgcatc
cgcaaacaggtcaactataatgacgcctctcaagaggaccaagagtggcaggacgatctt
tcggataatcagtctgagtactctgtcgggtctgaagatgaagatgaagattttgaggaa
cggcctgagggtggacgcagacactcccgcagacagctgaagagtgatcgggacaaacca
ttgccgccactgctggctagagttagtggaaatatagaggttttgggatttaatgcccgg
cagcgaaaagccttcttgaatgcgattatgcgctggggaatgcctccgcaagatgccttc
aactcacactggctcgtccgtgaccttagagggaaaagtgagaaggagttcagggcttac
gtgtctctgttcatgaggcacctgtgtgagccgggagcagatggagcagagacatttgca
gatggagtcccaagggaaggcctgtcccgccagcatgttctcacccggatcggtgtcatg
tctctggtccgcaagaaggttcaggagtttgaacatgtgaatgggaagtttagtacacca
gatcggattcctgtaggattagagctgaaaaaactaacagaaagtgtctcgtcggatcca
aacacccctgttcctgccagtcctgttccaactcaacccagcacaccggttccttcagat
aagacagagtcagtgtccgggtctcaagaagataaggagattgcagagccagagaacacc
aaaccgctggaccctgagccagttgttccagaaccctctcctgcgccagaaaagaccaat
gagggagaagaaacaaaaaacggcagtcctgaagagaaacgattggaggagagcgagaaa
agtgacacccctccagtccaatcagagccatcagccaatcaagcaccgccacctactaag
caatgtgagcagccagccaatcagacaccttcagactgtggtaaaggaaaagagacttct
ccagaaagaggggaaactaaacccagccctccaaaaacagaggataaggaacaaaaacca
gccattcctgatgatgtaaaatctgaagaccctcctgaaaaccaagtgaatggagagaaa
gatgtaagagatgagacggacgagggccacagagatgacaagagcagcatcaaaactcgc
ttcatgttcaacattgcagatggaggattcacagagttgcacacgctatggcagaatgag
gaacgcgcagctgtgtcatctggcaaaatatacgacatctggcatcgtcgccatgactac
tggctgctggctggcatcgtaacacatggttatgcccgctggcaggacattcagaatgac
ccacgttatgccatcctcaatgagcctttcaagactgaaatgcataaagggaactactta
gaaatgaagaacaagttccttgccagacgctttaagctactggaacaagctttggtcatc
gaggagcagctccggcgtgcggcgtacctgaacatgactcaggaccccagtcatcctgcc
atggccctcaacacacgttttgcagaagtggagtgtctggccgagtctcatcagcacctc
tccaaagagtctctggctggtaacaagccagccaatgcagtgctgcacaaagtgttaaat
cagctggaggagttgttaagtgatatgaaggcggatgtgacgcgtttgccctccatgctt
tcgcgggtgccaccagtgtccgcgcggctccagatgtcagagcggggcatcctcagcaga
ctcaccagccggggcaatgagccgccacctcagcagcctttccctcagggctctttcggc
tgttctcagatgtataatagcagtttcgccggagggtttcgtggacctggaggcaccgcc
atggtgaactatagccagatgcccctggggccgtacgtcagtgtttcctcaaacgggcct
cctgcccctaccagcctcctggagaagaagtcgagtgacgtcctgcgagatgtggtaacc
cctgatttaaaatcaggcaaacccagtgatgttatatgcatcgaggactag
DBGET
integrated database retrieval system
