Danio rerio (zebrafish): 553471
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Entry
553471 CDS
T01004
Symbol
smarcc1b
Name
(RefSeq) SWI/SNF complex subunit SMARCC1b
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
dre
Danio rerio (zebrafish)
Pathway
dre03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
553471 (smarcc1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dre03021
]
553471 (smarcc1b)
03036 Chromosome and associated proteins [BR:
dre03036
]
553471 (smarcc1b)
Transcription machinery [BR:
dre03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
553471 (smarcc1b)
Chromosome and associated proteins [BR:
dre03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
553471 (smarcc1b)
PBAF complex
553471 (smarcc1b)
GBAF(ncBAF) complex
553471 (smarcc1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
SWIRM-assoc_3
Myb_DNA-bind_6
BRCT_2
DUF919
Motif
Other DBs
NCBI-GeneID:
553471
NCBI-ProteinID:
NP_001082836
ZFIN:
ZDB-GENE-060503-273
Ensembl:
ENSDARG00000098919
UniProt:
A4QN49
LinkDB
All DBs
Position
19:complement(21600395..21637368)
Genome browser
AA seq
959 aa
AA seq
DB search
MAAQTQGSAAAGLTTSQVSCSTSISRKMDGGPCCKYWENPEIMSQMETVRSWIGKHYKKN
VQSDAPSCKSLTGLVIQLLQFQEDSFGRRANKPNFTKLPVKCFQDLRPGGALCHILGSVY
KFKTEQGWRRFDLQNPSRLDRNTEMLGCVEKTLMQNNLLSRPVVYLSPDLEQKQTSKLKD
IILRHNGTVTEDKSLATHQIYPSSTTDEEEWFRPVMRLDQQVMVHWGMCPDSYDSLISAS
DVDADVEEPPNPDRCLKVSSRWVLDTDTYNEWMNEEDYEIDENGNSLRFRRRIYQNTEEQ
KPFKKRRRSPSPPPSESKKKGGKKSSSGVYKKRGQPEEADPEEDLTKEMEDPTPVPNMEE
VILPKNVNLKKDSENTPVKGGIMADLDDQEEDLLAGVRDEEEQREFGRGMEGEESATEQT
HHIIVPTYASWFDYNCIHQIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEYL
TSTSSRRNLTGDVCALIRVHSFLEQWGLINYQVDAESRPLPMGPPPTPHFNVLTDAPSGL
VPLQHRPLQVSASQHMLHFPEKSREKPSDLQNFGLRSDIYAKKHPKSKGASAGREWTEQE
TLLLLEALEMYKDDWNKVSEHVGSRTQDDCILHFLRLPIEDPYLENSEASMGPLAYQPVP
FSQSGNPVMSTVAFLASVVDSRVASAAAKAALEEFSRAREDAPSEFFNANFHKAPRVRLN
LEPAFTLQTGGAAGLDSDLSEKNDGGGIETLNTEYDQHEKLEGDSILGERDRVKNEEKEE
SEGERGDESTAEESFDMSLTQGEGEQMKRRLELDVVEGSIATAAAAALASAATKAKHLAA
VEERKIKSLVALLVETQMKKLEIKLRHFEELETIMDREKEALEQQRQQLLSERQTFHLEQ
VKYAEQKVRQNVEQQQPQQQTGGSQSSPTFNPLHQGRPVGSTGQMMATRHPGAPNGMCE
NT seq
2880 nt
NT seq
+upstream
nt +downstream
nt
atggccgcacaaacgcaaggatcggctgcagcgggacttacgacaagtcaagtcagttgt
agcacctcaataagccgaaaaatggacggtggaccatgctgtaaatactgggagaacccg
gaaataatgtctcagatggaaacggttcgcagttggatcgggaagcattataaaaagaat
gtgcagtctgatgctccctcatgcaagtctctaactggtctggtcatccaacttctgcag
tttcaggaagattcttttggtcgtcgagcaaataagccaaactttacaaaacttcccgcc
aagtgttttcaggacctgaggccaggaggtgctctctgccacatactgggatcagtgtac
aagtttaagaccgaacagggctggaggcgcttcgatctgcagaatccatccagactggat
cgcaatacagagatgctgggctgtgtggagaaaacgctgatgcagaataacttattaagc
agacctgtggtgtacctttccccggatctggaacaaaagcaaacttctaaacttaaagac
atcatcctgcgacacaatggcacagtgacagaggacaagtcactagcaactcaccagatt
tacccatcatccacaacagatgaagaagagtggtttagaccagtcatgcgattggatcag
caagtgatggtgcactggggcatgtgtccagacagttatgattcgcttatatcagcaagt
gatgtagatgcagatgttgaggaacctcctaaccctgacagatgcttgaaggttagttcc
agatgggttctcgacacggatacatataacgagtggatgaatgaagaagactatgagatt
gacgagaacgggaatagtttgcgttttcggcgacggatctaccaaaatactgaagagcag
aaaccttttaagaaacggcggcgctccccatctccaccaccttctgagtccaaaaaaaag
ggaggaaagaaaagtagctcaggggtctataaaaaacgtggccagccagaagaggcagat
ccagaggaggatcttactaaggagatggaggatcccacacctgtccccaacatggaggag
gtcatcctgcctaaaaatgtgaacctgaaaaaagacagtgaaaacactccagtcaaaggt
ggcattatggctgatttagatgaccaggaagaggacctgctcgctggtgtcagagatgag
gaggagcagagggagtttggtcgtgggatggagggggaggaaagtgccacagagcaaacg
catcacatcattgtgcccacctatgcctcctggttcgactacaactgtattcatcagatt
gagagaagagcccttcctgagtttttcaatgggaaaaataagtccaaaactccagaaata
tatcttgcatatcgcaacttcatgattgacacataccggctaaaccctcaggagtatctg
acctcaacctcctccagacgaaacctaactggagatgtgtgtgctctcataagggttcat
tcttttttggagcagtggggattgataaattatcaggttgacgcggagagtcgccccctc
ccgatgggcccacccccaacaccacactttaatgttcttacagatgcaccctctggacta
gtcccactacagcacagaccactacaggtttcagcttctcagcatatgctgcatttccct
gagaaatcaagagaaaaaccatctgacctgcagaactttggtttacgaagtgacatttat
gctaagaaacatccaaagagtaaaggtgcaagtgcagggagagaatggacagaacaggaa
acactcttgctgttggaggctttggagatgtataaagatgactggaataaggtgtcagag
catgtgggcagccgcacacaggatgactgtattcttcacttcttgcggttaccaatagag
gacccatacctagagaactctgaagcctcaatgggtcctttggcctatcagccggtcccc
ttcagccagtcagggaaccctgtgatgagcactgttgcttttctggcatctgtggtggac
tctcgggtggcctctgcagcagccaaagcagctttagaggaattctcaagagcaagagaa
gacgccccttcagagtttttcaacgctaactttcacaaagcaccgagagtcagacttaat
ttagaaccagcctttacactccaaacaggcggagctgcaggactcgattctgacctttca
gaaaaaaatgatgggggtggtatagaaacgctgaatactgaatatgaccagcatgaaaag
ttggagggtgacagcattttgggagaaagagatcgcgtgaagaacgaggagaaagaagag
agtgaaggagagcgaggagacgagagcacagcagaggagagttttgacatgagcctaact
caaggagaaggagagcagatgaagaggaggctggagctggatgtggtggagggaagtatt
gcaacagcagccgcagcagcactggcctcagctgcaaccaaagcaaagcacttggcagca
gtagaagagaggaagatcaaatctctggtggctctgttggttgagactcagatgaaaaag
ctggagatcaaactgagacattttgaagagctggagaccattatggatcgggaaaaagag
gctcttgagcagcaaagacagcagttactctctgagaggcagaccttccacctggagcag
gtgaaatatgcagagcagaaagtgcgacagaatgtggaacaacagcagccgcagcagcaa
actggaggctctcagagcagccctacattcaaccctcttcaccaaggtcgtccagtgggc
agcactggacagatgatggccactcgacaccctggagcgcccaatggcatgtgtgaataa
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integrated database retrieval system
