Danio rerio (zebrafish): 553516
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Entry
553516 CDS
T01004
Symbol
tdp2b
Name
(RefSeq) tyrosyl-DNA phosphodiesterase 2
KO
K19619
tyrosyl-DNA phosphodiesterase 2 [EC:3.1.4.-]
Organism
dre
Danio rerio (zebrafish)
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dre03400
]
553516 (tdp2b)
DNA repair and recombination proteins [BR:
dre03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
553516 (tdp2b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
UBA_4
Exo_endo_phos2
UBA_8
TAP_C
Motif
Other DBs
NCBI-GeneID:
553516
NCBI-ProteinID:
NP_001073171
ZFIN:
ZDB-GENE-050816-1
Ensembl:
ENSDARG00000035954
UniProt:
Q5XJA0
Structure
PDB
PDBj
LinkDB
All DBs
Position
19:complement(31568993..31576017)
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AA seq
369 aa
AA seq
DB search
MSALEESRTRLCDQFAFVSGSDSAVAQCYLAENEWDMERALNSFFEAHMDSVFDEEAEKT
EVTGNKRKDDTAEASGTKKKLKTDNADCIDLTAEEPTCSITVNSKENQAENGTAKSEVED
SKLSIISWNVDGLDTLNLADRARGLCSYLALYTPDVVFLQELIPAYVQYLKKRAVSYLFF
EGSDDGYFTGIMLRKSRVKFLESEIICFPTTQMMRNLLIAQVTFSGQKLYLMTSHLESCK
NQSQERTKQLRVVLQKIKEAPEDAIVIFAGDTNLRDAEVANVGGLPAGVCDVWEQLGKQE
HCRYTWDTKANSNKTVPYVSRCRFDRIFLRFAKTRPAVTPDHMALIGMEKLDCGRYTSDH
WGIYCTFNT
NT seq
1110 nt
NT seq
+upstream
nt +downstream
nt
atgtctgctctggaggaatccaggacgagactttgtgatcagtttgcctttgtatctgga
tcggacagcgccgtggcacagtgctatctagcagaaaatgagtgggacatggagagagct
ttaaactctttctttgaggctcatatggattcagtctttgatgaggaagcagagaaaact
gaagtgactgggaataagagaaaagatgacactgctgaagcttcagggacgaagaagaaa
ttgaagacggacaatgcggattgcattgacttgacagcagaggagcccacctgctctatt
actgtaaactctaaagaaaatcaggctgaaaatggcacagccaaatctgaagtggaggac
agcaagctctccatcatcagctggaatgtggacggtttggacacattaaatcttgcagat
cgtgccaggggcttgtgctcatatctagctctatacacaccagatgtggtttttcttcaa
gagctcattccagcttatgttcagtatcttaagaaacgtgccgtcagctacttgtttttt
gaaggaagcgatgatggatactttaccgggataatgttaaggaaatcaagagtaaaattt
ttggaaagcgagatcatctgttttccaacaacacaaatgatgaggaatctgctcattgct
caggtgactttctcaggtcagaagctatacttgatgacatcccatttagaaagctgtaaa
aaccaatcccaggagagaacgaaacaattgcgggttgtgcttcaaaagattaaggaagcg
ccagaagatgccattgtcatttttgcaggcgacacaaatctcagagacgcagaggtggcc
aatgttggaggtttgcctgcaggtgtgtgtgatgtgtgggaacagctgggcaaacaagaa
cactgcaggtacacctgggacaccaaagctaacagcaataagactgtgccttacgtcagc
agatgtcgcttcgaccgcatattcctgaggtttgctaaaacccgtccagcggtcactcct
gaccacatggccttgattggaatggagaaactggactgtggtcgttataccagtgatcac
tggggtatttactgcactttcaacacatga
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