Danio rerio (zebrafish): 554269
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Entry
554269 CDS
T01004
Symbol
col4a1
Name
(RefSeq) collagen alpha-1(IV) chain
KO
K06237
collagen type IV alpha
Organism
dre
Danio rerio (zebrafish)
Pathway
dre04510
Focal adhesion
dre04512
ECM-receptor interaction
dre04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
554269 (col4a1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
554269 (col4a1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
554269 (col4a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
dre04147
]
554269 (col4a1)
00536 Glycosaminoglycan binding proteins [BR:
dre00536
]
554269 (col4a1)
Exosome [BR:
dre04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
554269 (col4a1)
Glycosaminoglycan binding proteins [BR:
dre00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
554269 (col4a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
554269
NCBI-ProteinID:
XP_694040
ZFIN:
ZDB-GENE-081105-114
Ensembl:
ENSDARG00000055009
UniProt:
A0A8N7UT91
LinkDB
All DBs
Position
9:complement(8630976..8730453)
Genome browser
AA seq
1640 aa
AA seq
DB search
MRLPCVTVFLLAVFLSIDESTAKGGCSGSSCGGCDCSGVKGAKGEVGLPGLMGLVGFPGM
QGHEGPPGSMGPKGDRGEIGAPGIKGSRGLPGQAGFPGRPGIPGLPGLEGAPGPQGIPGC
NGTKGERGFDGIPGITGLLGPPGIPGIKGGKGDPGGVIGLPIPLKGDRGLPGQHGFPGQK
GNAGQQGPVGPPGPYGPPGRPGDPGQKGEPGDKLTFIGEKGEKGQRGLTGPPGPPGRSEE
YEGPATTLYLPGPPGETGSTGDKGDKGSCAPHQHGIKGEPGPPGPIGKPGKDGQSGEKGE
IGFPGNPGLDGFKGDKGERGPPGYGAGSPGPPGPPGLPGAEGETGFQGEPGAPGPPGRYI
EGPPGPPGFPGEIGKKGEKGADGRSFPGPKGTDGQPGPPGPPGPINEECDVTKGAPGPPG
PPGLQGEVGQKGDQGETCTECNAFGPPGLPGPQGPKGLQGFPGPAGIKGEKGLPGPSGPA
GNAGFNGAPGLMGKPGAQGEPGDIFVAPGLKGDKGLPGTTGDRGFPGVDGLPGKDGRPGY
PGTKGEPAKFGIKGDRGPDGDFGVPGPPGERGPPGEPGIGRPGQPGDKGSAGFPGAPGRP
GLQGAKGEAGKVISLPGPQGAPGPRGESGRPGLQGDRGFPGERGVPGFPGDKGDPGLPGI
GLPGPPGPKGYSGIPGPSGIPGESGEPGQDGLPGRAGTPGQKGEPGRGLPGPKGTTGLPG
VPGFPGEKGNTGMPGVPGTEGRTGPPGPQGLKGNPGPPGVHGALGPPGPPGLGEPGAPGP
MGPPGGPGPIGQSGIKGDKGYQGLPGLDMPGPPGDRGSPGVPGLPGSKGLPGQPGVPGKD
GFPGERGPKGEIGIMGMAGPPGFQGLVGNPGDPGQKGDPGMPGIRGDFGDLGTKGERGEP
GLQGPPGNMSDVDMEHMKGDKGDIGDRGDPGPTGEKGFPGTSGDPGMPGKDGMPGSPGQP
GDKGDPGIIGKPGSIGEPGDTGARGDMGYPGSMGPKGAKGVGGSPGHPGFKGTDGSKGDK
GDPGEPGIGIPGPPGTKGNIGSPGFPGEPGEKGQKGTMGMTGTPGTQGHKGDQGSIGYPG
SPGKPGEKGVGGLPGSPGEPGTPGRPGEPGLQGPPGPHGEKGQSGQDGIPGFTGERGEPG
VPGRGLPGSRGEPGGKGDKGNPGLPGIPGSPGIPGTKGDKGLSGLPGDQGRPGERGLPGQ
AMEGPKGDRGDQGQPGERGATGEQGPPGIPGSAGSKGEKGDVGFQGAPGSRGYKGDKGFI
GVSGEPGLPGYNGPKGEMGPQGVPGFPGTKGEQGVIGSKGEGGDRGFPGLKGSEGPPGPP
GPHTYVKGDPGPPGPQGPQGLVGIQGFPGAKGQQGVMGLQGLKGSDGTPGYNGHPGAKGE
PGQTGPPGPRGYPGPPGPDGIPGHIGPPGPSSMDHGFLVTRHSQTIDVPHCPQGTTPIYD
GYSLLYVQGNERSHGQDLGTAGSCLRKFSPMPFLFCNINNVCNFASRNDYSYWLTTPEPM
PMSMAPVTGESIKPFISRCAVCEAPAMVIAVHSQTIQIPNCPDGWASLWIGYSFVMHTSA
GAEGSGQALASPGSCLEEFRSAPFIECHGRGTCNYYANSYSFWLATIEDTDMFTKPVPAT
LKAGSLRTHISRCQVCMKRV
NT seq
4923 nt
NT seq
+upstream
nt +downstream
nt
atgcggcttccatgtgtcactgtttttctcctcgcagtcttcttgagcatagacgagagt
acagctaagggtggatgctcggggtcttcatgtggtggttgtgactgcagcggtgttaaa
ggggcaaagggtgaggttgggctccctggtttgatgggccttgttgggtttcctggaatg
caaggtcatgagggccctccagggtcaatggggccaaagggtgacagaggggagatagga
gcaccaggaattaaaggaagcagaggcctacctggtcaagctggtttcccaggacgtcca
ggtattccaggtcttcctggtctagaaggagcacctggacctcaaggaatcccaggctgc
aatggaacaaagggggagcgaggatttgatgggatcccaggtattacgggattgctggga
ccaccgggtataccaggtattaagggaggaaagggtgatccaggtggtgttattggatta
cccatccctctaaaaggagacagaggcttgccaggacaacacggtttcccaggtcaaaaa
ggtaatgctggacaacaagggcctgttggtccacctggaccttatggacctccgggaaga
ccaggtgatcctggacaaaaaggagagccgggtgacaagctgacctttattggtgagaaa
ggggaaaagggacaaagaggtttaaccggccccccaggtcctccaggaaggtcagaggaa
tacgaaggccctgccacaacactttatcttcctggaccaccgggtgagacaggctctact
ggagacaaaggagacaaaggttcctgtgcaccacatcagcatggaataaaaggtgaacca
ggaccaccagggccaatagggaaaccagggaaagatggacagagtggagaaaagggggaa
atcggcttccctggtaatccgggacttgatggcttcaagggtgacaaaggagaaagaggg
ccaccaggatatggtgctggttctcctggccctcctggtcctccaggcctccctggagca
gaaggagaaacaggttttcaaggagagccaggagctcctggtcccccaggcagatatatc
gagggtcctcctggaccacctggcttccctggagagattggcaagaaaggagaaaaagga
gccgatggacggtcttttccaggtcccaaaggaactgatgggcaacctggcccacccgga
ccgccaggacctattaatgaagaatgtgatgttacaaaaggagctccaggccctccggga
cctccagggttgcaaggagaggtgggacagaaaggtgatcaaggtgaaacatgcacagag
tgcaatgcttttggtccccctggtttgcctggtcctcaagggccaaagggtctgcaaggt
tttcctggaccagcaggtattaaaggcgagaagggtttgccagggcccagtgggccagct
ggaaatgctggttttaatggtgctccaggtttgatgggtaaacctggtgctcaaggtgaa
cctggtgatatatttgtggctcctgggctgaagggagataagggcttacctggtactact
ggagacagaggattcccgggtgttgatgggctcccaggaaaagatggacgaccaggatat
cctggaaccaagggagagcctgctaaattcggaattaagggtgatcgtggcccagatgga
gattttggagttcctggccctccaggcgaaagaggtcccccaggtgaaccaggtataggt
cggccaggtcaacctggagataagggctctgcaggattccctggtgcaccaggaaggcca
ggactacaaggagctaaaggtgaagctggtaaagtcataagtttacctgggcctcagggt
gccccagggcctcgtggagagagtggtagacctggtcttcaaggtgatagaggatttcca
ggtgaacgtggggttccaggattccctggagataaaggtgaccctggactgccaggaatt
ggacttccaggacccccggggccaaaagggtactctggtattccaggaccaagtggaatc
ccaggagagtctggcgaaccaggtcaggatggcttacctggtcgcgcaggaacacctggt
caaaaaggtgaacctggcaggggtcttcctggtcctaagggtactacaggtctaccagga
gtgccaggatttccaggggaaaagggtaatactggaatgccaggggttcctggaacagaa
ggacgtactgggccacctggacctcaaggacttaaaggtaaccctggaccacctggagtc
catggtgcactagggccaccaggtcctccaggactgggagaacctggagctcctggacca
atggggccacctggaggccctggacctattggccagtctggaataaagggtgacaagggt
tatcaaggactacctggtttggacatgcctggccctccaggagacagaggtagccctggt
gtcccaggtctaccaggatcaaagggtttgcctgggcaaccaggagttcctggaaaagat
ggctttcctggcgaacgtggtccaaaaggagaaattggaatcatgggaatggcaggacca
ccaggatttcaaggtttagttggaaatcctggagatcctgggcaaaagggtgacccaggt
atgcctggcatcagaggagactttggtgatttaggcaccaagggtgagagaggagagccg
ggtctacaggggccacctggaaatatgagtgatgtggacatggaacacatgaaaggggat
aaaggagacataggagacagaggtgatcctggtcctactggagaaaaggggtttcctgga
acatctggtgaccctggtatgccaggaaaagatggaatgccagggtcacctggacagcca
ggtgataaaggagaccctggaatcattggaaaaccaggaagcattggagaacctggagac
acaggcgctagaggagacatgggatacccaggttcaatgggtccaaagggtgctaaaggt
gttggtggttcaccgggtcaccctggttttaaggggactgatggctccaaaggagataaa
ggagatcctggtgaaccaggaataggaatccctggtccccctggcacaaagggaaatata
ggctcccctggattccctggtgagcctggagagaagggacagaagggtacaatgggtatg
acaggaactcctggaactcaaggacataaaggagaccaaggatcgattggttacccaggc
agtccagggaagcctggtgagaaaggtgttggtgggttgccagggtccccaggagaacct
gggactccaggacgtccaggtgagcctggtctacagggtcctccaggtccccatggggaa
aaaggtcaatcagggcaagatggcattcctggattcactggagagagaggggagcctggt
gtaccagggagaggtttgcccggatctcgtggagaacctggcggcaaaggtgacaaaggc
aaccctggtcttcctggcattcccgggagtccaggtatacctggaaccaaaggtgataaa
ggtctgtcaggattgccaggggatcaaggtcgacctggggagagaggacttccaggacaa
gccatggaggggcctaaaggggacagaggagaccagggacagccaggagaaagaggtgca
actggtgaacaaggtccacctggaattccaggaagtgctggatcaaaaggagaaaaggga
gatgtgggcttccaaggcgcaccaggctctcggggttataaaggagacaaaggcttcatt
ggcgtttctggtgagcctgggttgcctggttataatggaccaaagggtgagatgggaccc
cagggtgttcctggtttccctggtacaaagggtgaacaaggagtgattggttctaagggt
gaaggaggtgacagaggattcccaggtcttaaaggtagtgaaggtccccctggaccccct
ggaccacacacatatgtaaagggagatccaggtcctccaggaccacagggtccccaaggt
ctagttggaattcaaggcttccctggggcaaaaggacaacagggtgtgatgggactccag
ggtttaaaaggaagcgatgggacacctggctataatggacatcctggggccaaaggagag
cctggacaaactggaccccccgggcctagagggtaccccggacccccagggcctgatggt
attccaggtcatatcggccctccaggcccttcctcaatggaccacggcttccttgtaact
cgccacagtcagactattgatgtaccacattgtccacagggaacgacgccaatctatgat
ggatattccctgctttatgtccagggcaatgaaaggtcacatgggcaagatctaggtaca
gctggtagttgcctaaggaagttcagcccaatgccgttcctcttctgtaacatcaacaat
gtttgcaactttgcatctcgtaatgactattcctactggctgaccactccagagcccatg
cctatgagcatggcccccgtcaccggcgagagcatcaaacccttcatcagcagatgtgct
gtgtgtgaggctcctgctatggttatagctgtgcacagtcagaccatacaaattccaaac
tgtcccgatggctgggcttcactctggattggatactctttcgttatgcatacgagcgct
ggtgctgagggctccggtcaggctttggcttctcctggctcttgtcttgaagagttccgc
tcggctcccttcatcgagtgtcatggtcgcggcacctgcaactactacgccaattcttac
agcttctggttagccaccatagaagacacagatatgtttacgaaaccagtccctgcaaca
ttaaaggccggaagtctaagaactcacatcagcaggtgtcaagtgtgcatgaagagggta
taa
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integrated database retrieval system
