Danio rerio (zebrafish): 554270
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Entry
554270 CDS
T01004
Symbol
col4a4
Name
(RefSeq) collagen alpha-4(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
dre
Danio rerio (zebrafish)
Pathway
dre04510
Focal adhesion
dre04512
ECM-receptor interaction
dre04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
554270 (col4a4)
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
554270 (col4a4)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
dre04147
]
554270 (col4a4)
00536 Glycosaminoglycan binding proteins [BR:
dre00536
]
554270 (col4a4)
Exosome [BR:
dre04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
554270 (col4a4)
Glycosaminoglycan binding proteins [BR:
dre00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
554270 (col4a4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
554270
NCBI-ProteinID:
XP_009290110
ZFIN:
ZDB-GENE-101001-1
Ensembl:
ENSDARG00000002831
UniProt:
X1WFR7
LinkDB
All DBs
Position
15:complement(35952802..36054982)
Genome browser
AA seq
1670 aa
AA seq
DB search
MTRPHRIASTNLFFCRRLLLALLMIQTTLGGDKTEECGGRDCSVCQCFPPKGEQGNPGML
GRQGPQGPQGSPGPPGLRGDKGERGTIGFPGVSGPKGELGARGVEGHAGLDGVPGHPGPG
GLPGLPGKDGCNGTKGECGLNGEVGRPGLPGPVGLPGFKGAKGEPFYRTIYLPGKPGADG
PPGMVGPQGLQGIAGPKGPPGWVGSDGPKGKPGLKGPRGPPGDPGRSLAGPKGDEGDQGI
QGDPGPFEYVEPNPEDYIKGEKGEQGPRGYIGIPGQEGPEGPSAEKGEKGVIGLPGVRGP
PGYPGQTGRQGPKAERGVNGLPGLYGTKGLMGIPGDPGPKGKPVESQKYVIGLPGDPGPP
GNPGAPGDRGLMGIPGPSGDPGLSLPGAMGDTGLMGLSGLKGQKGGAGSIYGSLLSYGEP
GKRGFPGPKGQKGNPGTPGYYCLPGERGDLGRKGERGIVGYKGVQGRKGPDGGCACDPPG
DLPGDPGPPGPPGEPGDPGQKGFRGPLGEIGLSGDNGVNGITGSRGLTGPRGVKGKKGEV
MTLSIKGEKGDLGPSGQHGKQGYTGKSGVDGIDGDPGDPGPLGDDLFGPPGDRGCQGAIG
VKGVRGQTGPPGGCIMGSIGRRGQQGDPGPQGLAGFPGPKGLQGETLPCGPGIPGPRGCK
GMPGGIGDKGKLGNPGCIGQNGTRGPKGEIGEPGDCGITGQRGPDGYLGDPGEPGPCGIS
INGSPGIPGSRGPEGLKGSCGDRMFGAPGPLGPSGVQGCQGPKGVPGPPGPIGLQGMSGV
PGYPGRKGERGKDGAPGPPGRPGKSPEQCDKGDEGLPGKKGEQGLIGHRGYPGEKGSLGE
LGCPGIGAKGARGKPGTPGPQGCIGLQGPAGVNGDGGNPGYPGPKGLPGPCGQNGCPGNI
GQTGCLGPPGPKGLKGLNGCSGFPGFNGTKGQKGCVGPPGFPGDLFYHPVKGEIGPPGPN
GENGFCGERGDKGDPGPPGTPGYPGLNGPPGFERGCRGPPGARGVPGEPGVRGPHGPKGI
VGFPGENGDNGDPGLSGMPGTPGYRGYDGPKGDSGESICTPGRTGERGPCGDNGVPGPCG
ERGDNGDIGPAGPDGNCGPPGPPGINGHIGPPGVVGPPGTCGRHGLEGPPGPPGPPGSNG
NEGCTGLRGPPGPPGLHGLDGLKGVKGEIGSRGLGSTGERGDQGPEGDKGDQGDPGSRGP
SQTGVRGPKGPQGLQGDPGPMGPPGIVGEECRVPMPGLGGERGFPGLDGPPGPMGLMGDP
GNAFTVCGECGDPGGPGSLGFKGEKGCHGSGGTPGCQGPQGPKGEKGLCGLMGIPGLPGP
MGDCGPLGPSGAKGDKGDTGPKGDPGNVIKPTTCPPPQGPPGDPGPPGQIGEVGKNGDNG
SGGPKGEKGERGIIGIFGQTGPPGEDGPLGNPGDQGERGPAGFKGPPGPDGDRGPPGRNE
TLSTGFLLVMHSQSRYVPTCPAGLTQLWNGYSLLYLEGQERAHTQDLGQAGSCLPVFSTM
PFSCCNMDTCDYASRNDKSYWLSTNAPIPNKPLKGQDIEEHISRCVVCEAPTPTIAIHSQ
DRLDPVCPPKWRSLWTGFSFMMYTGSGDEGGGQSLTSTGSCLQDFRSQPFVECQGPRGTC
SYFASIYSFWMTIDMEHNDSSPHGPVITEERQQRDSTSRCSICMMNDPNQ
NT seq
5013 nt
NT seq
+upstream
nt +downstream
nt
atgacacgcccccaccgaatcgcctcgaccaacctctttttctgcaggaggcttttattg
gcacttttgatgatacaaacaactttggggggggacaagacagaagagtgtggaggtcga
gactgcagcgtctgccagtgtttccccccgaaaggagagcaggggaatcctggtatgttg
ggtcgacagggcccccaggggccccaaggttctcctggcccccctggacttcgtggtgat
aagggtgaacgaggaacaatagggttccctggggtgtccggtccaaagggagaactgggt
gctcgaggagttgaaggccatgctggattagatggagtgcctggccatcctgggcctggt
ggtcttcctgggcttcccgggaaggatggctgtaatggaaccaaaggggaatgtgggctg
aatggtgaggtgggacgccccggccttccaggacctgtgggactgcctgggttcaaaggg
gccaaaggagaaccgttttataggacgatttatctacctggaaaacctggtgccgacgga
ccaccaggaatggttggaccacaaggacttcaaggcattgctggcccaaaaggtcctcca
ggatgggtgggatctgacggccctaaaggtaaaccaggtcttaaaggtccaagagggcca
ccgggagacccgggtagatcactggcaggaccaaaaggagatgagggtgatcagggtatt
cagggtgatccaggtccatttgaatatgtggagcccaacccagaagactacataaaagga
gaaaagggggaacagggaccaagagggtatattggaatacctggtcaggaaggtcctgaa
gggccttcagcagaaaaaggagagaaaggagtgattgggctgcctggagtcagaggtcca
cctggatatccaggccaaacagggcgtcaaggacctaaggctgaacgtggtgtgaatggt
ctccctggtctctatggcaccaaagggctgatgggcatcccgggtgaccctgggcctaaa
ggaaaaccggtggaatctcaaaaatatgtgataggactacctggagatcctggaccaccg
ggaaatcctggagcacctggtgacagagggttgatgggtatacctggaccttctggtgat
ccaggactatctttaccaggtgcaatgggtgacactggtttaatgggtctcagtggactc
aaaggacaaaaaggtggcgctggaagcatatatgggtcactcttgagctacggggaacct
ggaaaacggggttttcctggacctaaaggacaaaaaggaaatcctggcactcctggttat
tactgccttcctggtgaacgtggagatcttggacgaaaaggagaaagagggattgtcgga
tataaaggtgtccaggggagaaaaggtcctgatggaggatgtgcatgtgatcctcctggt
gatcttcctggggatccaggccctccaggccctccgggtgaacctggtgatcccgggcag
aaaggtttcagaggcccccttggtgaaattggactcagtggagacaatggtgtgaatggg
ataactggttccagaggcttaacaggtcccagaggagtgaaaggaaagaaaggagaggtt
atgacgttaagcataaaaggggagaaaggtgatctgggtccttctggacagcatggaaaa
caagggtatactgggaaatcgggggttgatgggatagatggcgaccctggagatcctgga
cctttgggagatgatctctttggtccaccaggtgacagagggtgtcagggcgctattggt
gtgaaaggtgtcaggggtcagactggacctcctggtggatgtattatggggtcaatcggg
cgacgggggcaacaaggagaccccggacctcaaggcctggcgggattccctggccctaaa
gggcttcaaggtgaaactctgccctgtggacctggcatacctggaccccgtggttgcaaa
gggatgcctggtggtataggtgacaaaggtaagcttggaaatccaggctgcataggacaa
aacggaacaaggggacccaagggagaaataggagaacctggggattgtggaatcactgga
caaagaggtccagatggctatttaggagatccaggtgaacccgggccctgcggcatcagt
attaatggctcacctggaatacctggcagtcgtggacccgagggtctgaaaggctcttgt
ggagaccgtatgtttggggctccagggccgctggggccctctggggttcagggatgtcag
ggccctaaaggtgtcccaggacctccaggacctattggattgcaaggtatgtctggtgtt
ccagggtatcctggtagaaaaggggaaagggggaaggatggtgcaccaggaccacctgga
cgcccaggtaagagtccagagcagtgcgataaaggagatgagggtctgcctggcaagaaa
ggagaacaaggcttaattggacatagaggctaccctggagagaaggggtcacttggggag
ctgggatgtcctggcattggagccaaaggagcccggggtaaacctggtactcctggaccc
caaggatgcataggccttcagggacccgcaggagtcaacggtgacggtggaaatcctgga
tatcctggaccaaagggtttgcctggaccatgtggacaaaacggctgtcctggaaacatc
gggcagacgggctgtttagggcctcctggaccgaaaggcttaaagggcctcaatggatgt
tcaggcttccctggatttaacggaaccaagggccagaaaggatgcgttgggcctccaggt
tttccaggagacttgttttatcaccctgtgaaaggagaaataggaccacctggacccaat
ggggagaatggtttctgtggagaaagaggtgataaaggtgatccaggtccaccgggaaca
ccggggtatccgggtctgaatggacctccaggctttgaaaggggctgtcgtggaccgcca
ggcgctcgtggggtgcctggtgagcctggagtacgtggaccacatgggccaaagggaatt
gtgggattcccaggggaaaatggtgataatggcgatcctggattgagcggcatgccagga
actcctggttatcgtggatatgatggtcctaaaggcgacagtggtgaatctatttgtacg
ccagggcgaacaggtgagagagggccatgtggagacaatggtgtgccaggtccctgtggg
gagagaggagacaatggtgacattggaccagcaggtccagatggaaactgtggccctcct
gggccacccgggatcaatggtcatattggacctccaggagtggttgggcccccaggtaca
tgtggtagacatggtctagaaggacctccggggcctccaggtccgccgggtagtaatggc
aatgaaggatgcactggccttcgaggacctccggggcccccagggcttcatgggctggac
ggtctaaagggtgtcaagggtgagattggatctcgagggctgggttccacaggtgaaaga
ggtgatcaagggccagagggagacaaaggtgatcaaggggacccggggtcacgaggccct
tcacaaacaggtgttcgaggtccgaaaggaccgcagggactgcaaggagatcctggtcca
atgggtcctccaggcattgtgggtgaagaatgtagggttccaatgcctggacttggtgga
gaacggggtttccctgggctggatggacctccagggcccatggggttaatgggggatcca
ggcaatgcttttacagtgtgtggtgaatgtggtgatccgggtggtcctgggtcacttggg
tttaaaggagagaaaggatgccatgggtctggtggcaccccggggtgtcaaggcccacaa
ggcccaaaaggtgaaaaggggctgtgtggacttatgggaatcccgggactccctggccct
atgggtgactgtgggcctctgggtcccagtggtgcaaaaggagataaaggggacacaggt
ccaaaaggagaccctggcaatgtcataaaacccactacttgtcctcctcctcagggccct
cctggtgatccaggtccaccgggacagatcggtgaagtgggtaaaaatggagataatggc
agtgggggtccaaaaggtgagaagggggaaagaggaatcattgggatttttggacaaact
gggcccccaggagaagatggacctcttggaaaccctggagatcaaggtgaaagaggacca
gctggctttaagggacctccgggaccagatggtgatcgaggtccccctggaagaaatgag
acactttctacaggctttcttctagtgatgcacagccagtcccgctatgtgccgacttgt
cctgcaggccttacacagttgtggaacggctacagtctgctttacctggagggtcaggag
agagcacacacacaagatctgggccaggcaggttcgtgtttgccagtgttcagcacgatg
ccgttctcctgttgtaatatggacacttgtgattacgccagccgcaatgacaaatcctat
tggctgtctacaaatgcccccattcctaataagcctctgaaagggcaggatatcgaggaa
cacatcagcaggtgtgtggtgtgtgaagctccaacaccaaccattgcaatacacagtcaa
gaccgtcttgacccagtgtgtccacccaaatggaggagcctctggaccggattttcattc
atgatgtatacggggtcaggggatgaaggcggtggacagtctctgacatcaacaggaagc
tgtttgcaagacttccgcagtcagccatttgtggagtgccaaggtccccgtggcacatgc
agttatttcgccagcatctacagtttctggatgactatagacatggagcacaatgactcc
agtcctcacggtcctgtgatcacagaggaaaggcagcagcgcgacagcaccagcagatgc
agcatctgcatgatgaatgaccccaaccaatga
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integrated database retrieval system
