Danio rerio (zebrafish): 554270
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Entry
554270 CDS
T01004
Symbol
col4a4
Name
(RefSeq) collagen alpha-4(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
dre
Danio rerio (zebrafish)
Pathway
dre04382
Cornified envelope formation
dre04510
Focal adhesion
dre04512
ECM-receptor interaction
dre04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
554270 (col4a4)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
554270 (col4a4)
09142 Cell motility
04820 Cytoskeleton in muscle cells
554270 (col4a4)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
554270 (col4a4)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
dre04147
]
554270 (col4a4)
00536 Glycosaminoglycan binding proteins [BR:
dre00536
]
554270 (col4a4)
Exosome [BR:
dre04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
554270 (col4a4)
Glycosaminoglycan binding proteins [BR:
dre00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
554270 (col4a4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
554270
NCBI-ProteinID:
XP_009290110
ZFIN:
ZDB-GENE-101001-1
Ensembl:
ENSDARG00000002831
UniProt:
X1WFR7
LinkDB
All DBs
Position
15:complement(35952802..36054982)
Genome browser
AA seq
1670 aa
AA seq
DB search
MTRPHRIASTNLFFCRRLLLALLMIQTTLGGDKTEECGGRDCSVCQCFPPKGEQGNPGML
GRQGPQGPQGSPGPPGLRGDKGERGTIGFPGVSGPKGELGARGVEGHAGLDGVPGHPGPG
GLPGLPGKDGCNGTKGECGLNGEVGRPGLPGPVGLPGFKGAKGEPFYRTIYLPGKPGADG
PPGMVGPQGLQGIAGPKGPPGWVGSDGPKGKPGLKGPRGPPGDPGRSLAGPKGDEGDQGI
QGDPGPFEYVEPNPEDYIKGEKGEQGPRGYIGIPGQEGPEGPSAEKGEKGVIGLPGVRGP
PGYPGQTGRQGPKAERGVNGLPGLYGTKGLMGIPGDPGPKGKPVESQKYVIGLPGDPGPP
GNPGAPGDRGLMGIPGPSGDPGLSLPGAMGDTGLMGLSGLKGQKGGAGSIYGSLLSYGEP
GKRGFPGPKGQKGNPGTPGYYCLPGERGDLGRKGERGIVGYKGVQGRKGPDGGCACDPPG
DLPGDPGPPGPPGEPGDPGQKGFRGPLGEIGLSGDNGVNGITGSRGLTGPRGVKGKKGEV
MTLSIKGEKGDLGPSGQHGKQGYTGKSGVDGIDGDPGDPGPLGDDLFGPPGDRGCQGAIG
VKGVRGQTGPPGGCIMGSIGRRGQQGDPGPQGLAGFPGPKGLQGETLPCGPGIPGPRGCK
GMPGGIGDKGKLGNPGCIGQNGTRGPKGEIGEPGDCGITGQRGPDGYLGDPGEPGPCGIS
INGSPGIPGSRGPEGLKGSCGDRMFGAPGPLGPSGVQGCQGPKGVPGPPGPIGLQGMSGV
PGYPGRKGERGKDGAPGPPGRPGKSPEQCDKGDEGLPGKKGEQGLIGHRGYPGEKGSLGE
LGCPGIGAKGARGKPGTPGPQGCIGLQGPAGVNGDGGNPGYPGPKGLPGPCGQNGCPGNI
GQTGCLGPPGPKGLKGLNGCSGFPGFNGTKGQKGCVGPPGFPGDLFYHPVKGEIGPPGPN
GENGFCGERGDKGDPGPPGTPGYPGLNGPPGFERGCRGPPGARGVPGEPGVRGPHGPKGI
VGFPGENGDNGDPGLSGMPGTPGYRGYDGPKGDSGESICTPGRTGERGPCGDNGVPGPCG
ERGDNGDIGPAGPDGNCGPPGPPGINGHIGPPGVVGPPGTCGRHGLEGPPGPPGPPGSNG
NEGCTGLRGPPGPPGLHGLDGLKGVKGEIGSRGLGSTGERGDQGPEGDKGDQGDPGSRGP
SQTGVRGPKGPQGLQGDPGPMGPPGIVGEECRVPMPGLGGERGFPGLDGPPGPMGLMGDP
GNAFTVCGECGDPGGPGSLGFKGEKGCHGSGGTPGCQGPQGPKGEKGLCGLMGIPGLPGP
MGDCGPLGPSGAKGDKGDTGPKGDPGNVIKPTTCPPPQGPPGDPGPPGQIGEVGKNGDNG
SGGPKGEKGERGIIGIFGQTGPPGEDGPLGNPGDQGERGPAGFKGPPGPDGDRGPPGRNE
TLSTGFLLVMHSQSRYVPTCPAGLTQLWNGYSLLYLEGQERAHTQDLGQAGSCLPVFSTM
PFSCCNMDTCDYASRNDKSYWLSTNAPIPNKPLKGQDIEEHISRCVVCEAPTPTIAIHSQ
DRLDPVCPPKWRSLWTGFSFMMYTGSGDEGGGQSLTSTGSCLQDFRSQPFVECQGPRGTC
SYFASIYSFWMTIDMEHNDSSPHGPVITEERQQRDSTSRCSICMMNDPNQ
NT seq
5013 nt
NT seq
+upstream
nt +downstream
nt
atgacacgcccccaccgaatcgcctcgaccaacctctttttctgcaggaggcttttattg
gcacttttgatgatacaaacaactttggggggggacaagacagaagagtgtggaggtcga
gactgcagcgtctgccagtgtttccccccgaaaggagagcaggggaatcctggtatgttg
ggtcgacagggcccccaggggccccaaggttctcctggcccccctggacttcgtggtgat
aagggtgaacgaggaacaatagggttccctggggtgtccggtccaaagggagaactgggt
gctcgaggagttgaaggccatgctggattagatggagtgcctggccatcctgggcctggt
ggtcttcctgggcttcccgggaaggatggctgtaatggaaccaaaggggaatgtgggctg
aatggtgaggtgggacgccccggccttccaggacctgtgggactgcctgggttcaaaggg
gccaaaggagaaccgttttataggacgatttatctacctggaaaacctggtgccgacgga
ccaccaggaatggttggaccacaaggacttcaaggcattgctggcccaaaaggtcctcca
ggatgggtgggatctgacggccctaaaggtaaaccaggtcttaaaggtccaagagggcca
ccgggagacccgggtagatcactggcaggaccaaaaggagatgagggtgatcagggtatt
cagggtgatccaggtccatttgaatatgtggagcccaacccagaagactacataaaagga
gaaaagggggaacagggaccaagagggtatattggaatacctggtcaggaaggtcctgaa
gggccttcagcagaaaaaggagagaaaggagtgattgggctgcctggagtcagaggtcca
cctggatatccaggccaaacagggcgtcaaggacctaaggctgaacgtggtgtgaatggt
ctccctggtctctatggcaccaaagggctgatgggcatcccgggtgaccctgggcctaaa
ggaaaaccggtggaatctcaaaaatatgtgataggactacctggagatcctggaccaccg
ggaaatcctggagcacctggtgacagagggttgatgggtatacctggaccttctggtgat
ccaggactatctttaccaggtgcaatgggtgacactggtttaatgggtctcagtggactc
aaaggacaaaaaggtggcgctggaagcatatatgggtcactcttgagctacggggaacct
ggaaaacggggttttcctggacctaaaggacaaaaaggaaatcctggcactcctggttat
tactgccttcctggtgaacgtggagatcttggacgaaaaggagaaagagggattgtcgga
tataaaggtgtccaggggagaaaaggtcctgatggaggatgtgcatgtgatcctcctggt
gatcttcctggggatccaggccctccaggccctccgggtgaacctggtgatcccgggcag
aaaggtttcagaggcccccttggtgaaattggactcagtggagacaatggtgtgaatggg
ataactggttccagaggcttaacaggtcccagaggagtgaaaggaaagaaaggagaggtt
atgacgttaagcataaaaggggagaaaggtgatctgggtccttctggacagcatggaaaa
caagggtatactgggaaatcgggggttgatgggatagatggcgaccctggagatcctgga
cctttgggagatgatctctttggtccaccaggtgacagagggtgtcagggcgctattggt
gtgaaaggtgtcaggggtcagactggacctcctggtggatgtattatggggtcaatcggg
cgacgggggcaacaaggagaccccggacctcaaggcctggcgggattccctggccctaaa
gggcttcaaggtgaaactctgccctgtggacctggcatacctggaccccgtggttgcaaa
gggatgcctggtggtataggtgacaaaggtaagcttggaaatccaggctgcataggacaa
aacggaacaaggggacccaagggagaaataggagaacctggggattgtggaatcactgga
caaagaggtccagatggctatttaggagatccaggtgaacccgggccctgcggcatcagt
attaatggctcacctggaatacctggcagtcgtggacccgagggtctgaaaggctcttgt
ggagaccgtatgtttggggctccagggccgctggggccctctggggttcagggatgtcag
ggccctaaaggtgtcccaggacctccaggacctattggattgcaaggtatgtctggtgtt
ccagggtatcctggtagaaaaggggaaagggggaaggatggtgcaccaggaccacctgga
cgcccaggtaagagtccagagcagtgcgataaaggagatgagggtctgcctggcaagaaa
ggagaacaaggcttaattggacatagaggctaccctggagagaaggggtcacttggggag
ctgggatgtcctggcattggagccaaaggagcccggggtaaacctggtactcctggaccc
caaggatgcataggccttcagggacccgcaggagtcaacggtgacggtggaaatcctgga
tatcctggaccaaagggtttgcctggaccatgtggacaaaacggctgtcctggaaacatc
gggcagacgggctgtttagggcctcctggaccgaaaggcttaaagggcctcaatggatgt
tcaggcttccctggatttaacggaaccaagggccagaaaggatgcgttgggcctccaggt
tttccaggagacttgttttatcaccctgtgaaaggagaaataggaccacctggacccaat
ggggagaatggtttctgtggagaaagaggtgataaaggtgatccaggtccaccgggaaca
ccggggtatccgggtctgaatggacctccaggctttgaaaggggctgtcgtggaccgcca
ggcgctcgtggggtgcctggtgagcctggagtacgtggaccacatgggccaaagggaatt
gtgggattcccaggggaaaatggtgataatggcgatcctggattgagcggcatgccagga
actcctggttatcgtggatatgatggtcctaaaggcgacagtggtgaatctatttgtacg
ccagggcgaacaggtgagagagggccatgtggagacaatggtgtgccaggtccctgtggg
gagagaggagacaatggtgacattggaccagcaggtccagatggaaactgtggccctcct
gggccacccgggatcaatggtcatattggacctccaggagtggttgggcccccaggtaca
tgtggtagacatggtctagaaggacctccggggcctccaggtccgccgggtagtaatggc
aatgaaggatgcactggccttcgaggacctccggggcccccagggcttcatgggctggac
ggtctaaagggtgtcaagggtgagattggatctcgagggctgggttccacaggtgaaaga
ggtgatcaagggccagagggagacaaaggtgatcaaggggacccggggtcacgaggccct
tcacaaacaggtgttcgaggtccgaaaggaccgcagggactgcaaggagatcctggtcca
atgggtcctccaggcattgtgggtgaagaatgtagggttccaatgcctggacttggtgga
gaacggggtttccctgggctggatggacctccagggcccatggggttaatgggggatcca
ggcaatgcttttacagtgtgtggtgaatgtggtgatccgggtggtcctgggtcacttggg
tttaaaggagagaaaggatgccatgggtctggtggcaccccggggtgtcaaggcccacaa
ggcccaaaaggtgaaaaggggctgtgtggacttatgggaatcccgggactccctggccct
atgggtgactgtgggcctctgggtcccagtggtgcaaaaggagataaaggggacacaggt
ccaaaaggagaccctggcaatgtcataaaacccactacttgtcctcctcctcagggccct
cctggtgatccaggtccaccgggacagatcggtgaagtgggtaaaaatggagataatggc
agtgggggtccaaaaggtgagaagggggaaagaggaatcattgggatttttggacaaact
gggcccccaggagaagatggacctcttggaaaccctggagatcaaggtgaaagaggacca
gctggctttaagggacctccgggaccagatggtgatcgaggtccccctggaagaaatgag
acactttctacaggctttcttctagtgatgcacagccagtcccgctatgtgccgacttgt
cctgcaggccttacacagttgtggaacggctacagtctgctttacctggagggtcaggag
agagcacacacacaagatctgggccaggcaggttcgtgtttgccagtgttcagcacgatg
ccgttctcctgttgtaatatggacacttgtgattacgccagccgcaatgacaaatcctat
tggctgtctacaaatgcccccattcctaataagcctctgaaagggcaggatatcgaggaa
cacatcagcaggtgtgtggtgtgtgaagctccaacaccaaccattgcaatacacagtcaa
gaccgtcttgacccagtgtgtccacccaaatggaggagcctctggaccggattttcattc
atgatgtatacggggtcaggggatgaaggcggtggacagtctctgacatcaacaggaagc
tgtttgcaagacttccgcagtcagccatttgtggagtgccaaggtccccgtggcacatgc
agttatttcgccagcatctacagtttctggatgactatagacatggagcacaatgactcc
agtcctcacggtcctgtgatcacagaggaaaggcagcagcgcgacagcaccagcagatgc
agcatctgcatgatgaatgaccccaaccaatga
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integrated database retrieval system
