Danio rerio (zebrafish): 556790
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Entry
556790 CDS
T01004
Symbol
ddx1
Name
(RefSeq) ATP-dependent RNA helicase DDX1
KO
K13177
ATP-dependent RNA helicase DDX1 [EC:
5.6.2.7
]
Organism
dre
Danio rerio (zebrafish)
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dre03041
]
556790 (ddx1)
03016 Transfer RNA biogenesis [BR:
dre03016
]
556790 (ddx1)
Enzymes [BR:
dre01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
556790 (ddx1)
Spliceosome [BR:
dre03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
556790 (ddx1)
Transfer RNA biogenesis [BR:
dre03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
556790 (ddx1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
SPRY
ResIII
CMS1
DUF5766
Motif
Other DBs
NCBI-GeneID:
556790
NCBI-ProteinID:
NP_001184253
ZFIN:
ZDB-GENE-041001-215
Ensembl:
ENSDARG00000032117
UniProt:
F1R2L8
LinkDB
All DBs
Position
20:33175190..33189652
Genome browser
AA seq
740 aa
AA seq
DB search
MAAFGEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV
IQIVYETIKDLQEGKKGRSAVKTGGAVFSKWQMNPFDRSTAFAIGSDGLCCQSREFKEWH
GCRTTKAVTKGRYYYEVACHDQGLCRVGWSTAQASLDLGTDKYGFGFGGTGKKSHNKQFD
SYGEEFTMHDTIGCYIDLEKGHVSFSKNGNDLGLAFEIPQQLRSQPFFASCVLKNAELKF
NFGDEAFKHQPKDGYVALNQAPEGHVVKSSQTGSAKVTQVKSSSNAPRALIIEPSKELAE
QTLNNVNQFKKYVDNPKLRELLIIGGVAAKEQLNVLESGVDIVVGTPGRLDDLISTGKLD
LSQVRFLVLDECDGLLSAGNTDFIMRIYNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSE
KIMHFPTWVDLKGEDSVPETVHHVVVTVNPKNDKLWERLGKNHIRTDEVHAKDDTRPGAN
SPEMWSEAIKILKGEYTVRAIKEHKMDQAIIFCRTKIDCDNMEQYFIKQGGGPDKKGHQF
SCVCLHGDRKPNERKYNLERFKKQEVKFLICTDVAARGIDVRGVPYVINVTLPDEKENYV
HRIGRVGRADRMGLAISLVAMEKEKVWYHVCASRGKGCYNTRLKENGGCTIWYNEKELLS
DIEEHLKCTITQCEPDIKVPVDEFDGKVTYGQRRATGGGLYKGHVDILAPTVQELANLER
EAQTSFLHLGYLPNQLFKAF
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atggcagcattcggcgaaatgggagtgatgccagaaattgcacaggcggtggaagaaatg
gactggctgttgccaacggacattcaggccgaatccattccactgattctgggtggagga
gacgtgctcatggctgctgagactggaagcggaaaaactggagccttcagtattccagtc
atccaaatagtctatgaaaccatcaaggacctgcaggagggaaaaaaaggacgcagcgcg
gtaaagacaggaggagcagttttcagtaaatggcagatgaacccctttgatagaagtaca
gcatttgctattggatcagatggcttgtgctgtcagagcagggagttcaaagaatggcat
ggctgtcgtaccaccaaagcggtcacaaaagggaggtattattatgaagttgcctgtcac
gatcaagggctgtgcagggtgggctggtccactgcccaggcatcactggacttgggaact
gataaatatggatttggctttggaggaactggaaagaaatctcacaataagcagtttgat
agttatggagaagagttcacaatgcacgacactatcggatgctacatagatctggaaaaa
ggccatgtgtcattctccaaaaatggcaatgatctgggtttggcttttgaaatccctcag
cagctgagaagccagccgttttttgcttcctgtgtgttaaagaatgctgaactgaaattc
aactttggcgatgaagctttcaaacaccaacccaaagacggatatgtggccctgaaccag
gctccagaaggtcatgtggtcaaatccagccagacaggtagtgctaaagtgactcaggtc
aaatctagctccaacgcccccagagctcttatcatcgagccgtctaaagaactggctgaa
caaaccctcaataatgtcaatcagttcaagaagtatgtggataaccctaaacttagagaa
cttctgattattggaggagtggctgccaaagaacagctcaatgttttagaaagcggggtt
gacattgtggtcggcaccccaggcagactggatgatctcatatccacaggaaagctggat
ctttcccaagtccgtttcctggtgctggatgagtgtgacgggctcctgtcggccggcaat
actgacttcatcatgaggatctacaaccaaatccctcaggtcacctcagacggcaagaga
ctacaggtgattgtttgttctgctacgctgcactcatttgacgtgaagaagctctcagag
aagatcatgcatttccccacatgggtggatctgaagggagaagattctgtaccagaaact
gtccatcatgtggtggtgacagtcaacccaaaaaacgacaagctttgggagagactgggg
aagaaccacataaggactgatgaagttcatgcaaaggacgacacacgacctggagccaac
agcccagagatgtggtctgaggctattaagatcctaaagggggagtacacagtcagagcc
attaaagagcacaagatggatcaggccatcatcttctgccggacaaagatcgattgtgat
aatatggagcagtacttcatcaagcaaggaggaggaccagataagaaaggacaccagttc
tcttgtgtatgccttcatggcgacagaaaaccaaatgaacgcaagtataatttggagcga
ttcaagaaacaggaggtgaaatttctgatttgcacagatgtggctgctagaggaattgat
gtccgtggtgttccttatgtgataaatgtaactctaccagatgagaaggagaactatgtt
catcgcattggaagagttggccgagcagacaggatgggtttggccatatcactggttgca
atggagaaagagaaggtgtggtaccatgtttgtgccagcagaggaaaaggctgctataac
accagactcaaagagaatggaggctgcactatttggtacaatgaaaaagagttgttgtca
gatatcgaggagcatctgaaatgcactattactcagtgtgaacctgacattaaagtacct
gtggatgaatttgatggtaaagtgacgtacggccagcgcagggccacaggaggtggtctt
tacaagggccatgtggatattttggccccgaccgtacaggaactggccaacctggagaga
gaggctcaaacttccttccttcatctgggttatctacccaaccagctctttaaagccttc
taa
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