Danio rerio (zebrafish): 557052
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Entry
557052 CDS
T01004
Symbol
hfm1
Name
(RefSeq) probable ATP-dependent DNA helicase HFM1 isoform X1
KO
K15271
ATP-dependent DNA helicase HFM1/MER3 [EC:
5.6.2.4
]
Organism
dre
Danio rerio (zebrafish)
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
dre03036
]
557052 (hfm1)
Enzymes [BR:
dre01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
557052 (hfm1)
Chromosome and associated proteins [BR:
dre03036
]
Eukaryotic type
Meiosis-specific proteins
Others
557052 (hfm1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
DEAD
ResIII
SNRNP200_wHTH
Helicase_C
DEXQc_Suv3
DUF2477
Motif
Other DBs
NCBI-GeneID:
557052
NCBI-ProteinID:
XP_021322847
ZFIN:
ZDB-GENE-061207-43
UniProt:
A0A8M9P056
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All DBs
Position
2:25787272..25824455
Genome browser
AA seq
1509 aa
AA seq
DB search
MVDSEESVSSLDNLFYDRPVIHKVKPLCQGQGSWVWDAPPSLSQIPSTQDIQREAAHASS
FSFSQRSKTFLPPAQKPIHNPTEGIQGQTVQSHELEEPGLWSHEPSSTGEQAVFRMGFAE
TRPLPTASAPPFKTRLFQASTRRTSGNGEDGISNQTLSTTNDTAFQSQAPRRTSGPQAAH
AVAACSPFIGLAQTEEKCDVPSSHSLHLGLKPAEFKGSSEKGTLRSVSEIPAKFRSVFKD
FPYFNYVQSQALDDVLYSNKNFVACAPTGSGKTVLFELAIVRLLIEASEPWHNVRAVYMA
PIKALCSQQYDNWKQKFGPLGLKCKELTGDTEIDDFFEIQDAHLIFTTAEKWDSMTRRWK
DNCLLTSIRLFLVDEVHVVKDKTRGATLEVVVSRMKTMHFYRQAINPESKASVRFVAVSA
TIPNIQDVSEWLSDESGPATCLEMDESHRPVKLRKVVLGFPCGSNQNEFKFDLSLNYKLA
NIIQTYSDQKPTLVFCSTRKGVQQSASVLAKDARFIMSIDHKQRLVKYANSLLDAKLRDL
FVYGIGYHHAGMDVSDRKITENAFTVGDLPVLFTTSTLAMGVNMPAHLVVIKSTMHYVGG
ACEEYSEADLLQMIGRAGRPQFDTTATAVIMTRPQTKDKYMHFLSGLDCIESSLHTNLVE
HLNAEIVLHTISDVNMALDWIRSTFLYIRALKNPKHYGFPPEVDKCGIETKLQELCLKNL
NSLASFNLITMDEDINIKPTETGKLMARYCVAFDTVKQFSMVTGTETLPELIEMISKAKE
FSDMQLRVNERKTLNTLNKDKNRTTIRFPIEGKIKSNDMKVNCLIQAQLGCIPIQEFGLI
QDTGKIFRNAVRVSRYLTEFLCHHSKSNFAAQLNALILAKCFRAKLWENSPYISKQLERI
GLSLATALVNAGLTTFSKIEQTSPRELELIVNRHPPFGNQIKEAISKLPRCEVSLEQIPR
YSPSTAEIVFTVNMNNFKELALKRTAPDHHYVTLIVGDCDNKVVFQQKISDTLLLKSGSW
SKRIEVTRSPKGEELSIHLISSEYVGLDIQQDYSAHYSGVHGLQAEFSITEKPTWRFQRI
HDTMKKRQGPTVATPNSSVNDILFVDQVAPNMVKRNCHHLCKNKELCRHDCCKIGVKRTV
LQSNVSSYLDNLKMRNEKLCETPVKRLKMMMNNGTAAVSMQQFSYKPKDTHSAAKRFEGS
QCYTQSAYQIQDLEASFATPSQNSSSEAWHDGYIDELGDGYTEHVNPALEHPQLSDLPQK
GEQSSLGLEGHEEMTFDSQPKPHSDGNMPRITLNKARVYSDLNDSTDRTGLRSDFPDVTF
DLGVNYWDDFDDRNLVDASNVCCESQQFNPMIEHHQPAHSGLSSGLSHCPAQTLQETVSP
VLPQRVQPMAVTPQTAMWTNLNTNTLSSDQSQASKGSVQKRFDFFSRTDAALKENTPVGS
DHTKEISDEAHVFFDSLNLGMALVLALGQGLALGLALGLFLCCPALSCIVDVALSRLGFA
NNKTVQQLV
NT seq
4530 nt
NT seq
+upstream
nt +downstream
nt
atggtggactcagaagaaagtgtatcatcactggataacctgttttatgaccggccagta
attcataaagtgaaacccttatgtcaaggacaaggctcctgggtttgggatgctccacca
tcattatcacaaataccttcgacacaagacatccagagagaggcagcacacgcttcttca
tttagtttctctcagagatcaaagacatttctgcctccagcacaaaaacctattcacaat
cccactgaaggtatccaaggtcagactgtgcaatcacatgagctggaggagcccggtcta
tggagccatgaaccctctagtacaggagagcaggctgttttcagaatgggttttgcggaa
acaaggcctttacctactgccagtgctcctccctttaagactcggctgttccaagcttcc
acaagaaggacttcaggaaatggagaagacggtatctcaaatcaaacattgtcaacaaca
aatgacactgctttccaaagtcaggctcctaggagaaccagcggtccgcaggctgcacat
gctgttgctgcatgtagtccctttattggtttggcccaaactgaggaaaaatgtgatgtt
ccctcaagccatagtcttcatcttggtcttaaacctgcagaatttaaagggtcttctgaa
aaaggaacacttcgttcagtctctgagattcctgcaaaattcagaagtgtgtttaaagat
ttcccttacttcaattatgtgcagtcccaggcactggatgatgttctgtactccaataaa
aattttgttgcctgtgctcccactggctctggaaagactgtgctatttgagctggccatt
gttcgactgctgattgaggcttcagagccttggcacaatgtcagagcagtgtacatggca
ccaattaaggctctctgcagccaacaatatgacaactggaaacagaagtttggacctctt
ggacttaaatgcaaggaactaactggagacacagagattgatgacttttttgaaatccaa
gatgctcatctcatttttacaactgcagaaaaatgggatagcatgactagaagatggaag
gataactgtttattgacatccattcgtctcttcctcgttgatgaggtacatgtggtgaaa
gacaaaacccgtggagccactcttgaggttgtggtcagcagaatgaaaaccatgcacttc
taccgccaagctattaatcctgaatcaaaagcatctgtgagatttgtagctgtctcagct
actatccctaatattcaagacgtatctgaatggctttcagatgagtcagggcccgccacg
tgtctggagatggatgaaagtcacagaccagtgaaactgaggaaagtggtgcttggcttc
ccttgtggaagtaatcaaaatgaattcaagtttgatctatctctcaactacaaacttgcc
aacattattcagacctactctgaccaaaaaccaacccttgttttttgctccacaagaaaa
ggagttcaacaatctgcttctgtgcttgccaaggatgccaggtttatcatgagcattgac
cacaaacaaagactggtgaaatatgcaaactctctgcttgatgcaaaactcagagatcta
tttgtttatggcattggatatcatcacgctggcatggatgtgtccgacaggaagatcacc
gaaaacgcatttacagtgggtgacttgccagttttatttacaacaagtactctagccatg
ggtgtgaatatgccagcccaccttgtggtaatcaaatccacaatgcactatgttggtggt
gcatgtgaggagtacagtgaagctgacctgttacaaatgattggaagagctggcagacca
cagtttgacacaacagcaactgcagtaatcatgacacggcctcagacaaaggacaaatac
atgcatttcttgagtggcttagactgcatagagagcagtttgcatacaaatctggtggag
cacttgaatgcagaaatagttcttcacaccatatctgatgtgaacatggctctggactgg
atccgctctactttcctgtacatccgtgctttgaaaaaccccaaacactatggctttccc
cctgaggttgacaaatgtggaattgagactaaattacaagaactgtgcttgaagaacctc
aactctttggcctctttcaacctgattaccatggatgaagacattaacatcaagcccaca
gagactggaaaactcatggctaggtactgtgttgcctttgacactgtgaagcagttcagc
atggtgactggcacagagaccttacctgagctgattgaaatgatatcgaaagcaaaagag
ttcagtgacatgcaattaagagtaaatgagagaaaaaccttgaacacattgaataaggat
aaaaaccgaaccaccatcaggtttccaatagaagggaagatcaaaagcaacgacatgaaa
gtgaattgtctgatacaagctcagcttggctgcatccccattcaggagtttggactcata
caggatactggaaaaatattcagaaatgcagttagagttagcagatatctgactgagttt
ctctgtcatcactccaaatcgaactttgcagctcaactcaacgctttaattcttgccaaa
tgttttcgagccaaactgtgggaaaactcaccctacatttccaaacagcttgagaggata
ggattatcacttgctactgcgttggtgaatgcaggccttacgacattcagcaaaattgag
cagaccagtcctagagaattggagctaattgtcaacaggcaccctccatttggaaaccag
attaaggaagccatcagcaaacttcccagatgtgaagttagtttggaacagattccacga
tacagtccatccacagctgagattgttttcacagtcaacatgaataactttaaggagttg
gcactgaagcggacagcgccagaccaccattatgtcactcttattgttggagattgtgac
aataaggtggtcttccaacaaaaaatctcggacactttgctcttgaagtctgggagctgg
tcaaagagaattgaggtgacaagatcaccaaagggagaggagctcagcattcatttgata
agctctgaatatgtgggtctggacatacagcaggactacagcgcccactactcaggagtg
cacggtttgcaagctgagttctccattacagagaaaccaacatggagatttcagaggatt
catgacacaatgaagaagagacaaggccccacagtcgcaactcccaattcttcagtcaac
gacattctcttcgtggatcaagttgctccaaacatggttaagagaaattgccatcatctc
tgcaaaaacaaagagctctgtagacatgactgctgcaaaattggagtcaaaaggactgta
ctacagtcaaatgtctcctcataccttgacaacctaaaaatgaggaatgagaaactttgt
gagactcctgtgaagcgattgaagatgatgatgaataatggcacagcagctgtaagcatg
cagcagttctcctacaaacccaaagacacacattctgctgccaagaggtttgaaggaagt
cagtgttacactcagagtgcttatcaaatccaggatctagaggccagttttgccactcca
tcccagaattcatcatctgaggcatggcatgatggttacattgatgagctgggagatgga
tatactgaacatgtaaacccggcattagaacatcctcaactgtctgatttacctcaaaaa
ggtgagcaaagttctctcggattggaaggacatgaggagatgacatttgacagtcagcct
aagccacacagtgatggaaacatgcccaggatcactcttaataaagcaagagtttattca
gacttaaacgacagcaccgacaggacaggtctcaggtctgattttcctgatgtgaccttt
gacctgggagtaaactattgggatgattttgatgacagaaacctggttgatgcaagtaat
gtatgctgtgaatcccaacaatttaacccgatgatagagcaccatcagcctgcacattct
ggtttgtccagtggtttgtctcattgtccagcacaaacgttgcaagaaactgtgagtcct
gtcttaccacaaagggtgcaaccaatggccgttactcctcaaactgcaatgtggacaaac
ttgaacacaaacaccctctcaagtgaccagagtcaagccagtaaaggttcagtccaaaaa
agatttgattttttctcaaggacagatgcagctttaaaggaaaacacacctgttggcagt
gatcacacgaaggaaatcagcgatgaagcccatgttttttttgattctctgaacttggga
atggcattggtactggcactgggacagggactggccttgggtctggcactgggactcttc
ctctgctgccctgcactgagctgcattgtagatgtagccctctctcgtctcggttttgct
aataataaaacagtacaacagttagtttga
DBGET
integrated database retrieval system
