Danio rerio (zebrafish): 557103
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Entry
557103 CDS
T01004
Symbol
u2af2a
Name
(RefSeq) U2 small nuclear RNA auxiliary factor 2a
KO
K12837
splicing factor U2AF 65 kDa subunit
Organism
dre
Danio rerio (zebrafish)
Pathway
dre03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
557103 (u2af2a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dre03041
]
557103 (u2af2a)
Spliceosome [BR:
dre03041
]
Complex A
U2 snRNP components
U2 related factors
557103 (u2af2a)
Complex B
557103 (u2af2a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
Transformer
RRM_occluded
RRM_7
Motif
Other DBs
NCBI-GeneID:
557103
NCBI-ProteinID:
NP_001025127
ZFIN:
ZDB-GENE-050706-131
Ensembl:
ENSDARG00000012505
UniProt:
Q4KMI5
LinkDB
All DBs
Position
16:12812455..12821768
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AA seq
465 aa
AA seq
DB search
MSDFDEFERQLTENKQADRDKENKHHRRSGSRSRSRDRDRKRRSRDRDRERRGSRDRHGD
SKDRRHRRSRSPHREKKKIKVKKYWDVPPPGFEHITPMQYKAMQAAGQIPATALLPTMTP
EGLAVTPTPVPVVGSQMTRQARRLYVGNIPFGITEESMMDFFNAQMRLGGLTQAPGNPVL
AVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQPLPGMSENPSVYVP
GVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEY
VDVNISDQAIAGLNGMQLGDKKLLVQRASVGSKNTTLTGINQTPVTLQVPGLMNSSVNQM
GGIPTEVLCLMNMVAPEELLDDEEYEEIVEDVRDECSKYGQVKSIEIPRPVDGLDIPGTG
KIFVEFMSVFDSQKAMQGLTGRKSANRVVVTKYCDPDAYHRRDFW
NT seq
1398 nt
NT seq
+upstream
nt +downstream
nt
atgtcagactttgacgagtttgagagacagctgaccgaaaacaaacaagcggaccgagac
aaggagaacaagcaccaccggcgcagtggctcgaggagtcgcagcagagatcgggacagg
aagagaaggagccgcgacagagacagagaaagaagaggcagtcgagaccgtcatggagac
agcaaagaccgcagacacagacgcagtcgttctccacaccgtgagaagaaaaagattaaa
gtgaagaaatattgggatgttcctcctcctggatttgaacacatcacacccatgcagtac
aaagccatgcaggctgctggtcagataccagccactgctctgctgcccacaatgacccct
gagggtctggctgtgaccccaacacctgttcctgtcgtgggaagtcagatgactcgacaa
gcccgacggctgtatgtgggcaacatcccatttggaatcacagaggagtctatgatggac
ttcttcaatgctcagatgcgtttgggaggcctgactcaggccccagggaaccctgttctt
gctgtccagatcaaccaggacaagaattttgcctttttggagttccgctctgtagatgag
acaacacaggccatggcatttgatggcatcattttccagggacagagtttaaagattcgc
cgaccacatgactaccagcctctgccaggcatgagcgagaatccaagtgtctacgtccca
ggcgttgtgtccacggtggtacccgattcggcccataaactctttattgggggtctgcca
aattacctcaatgatgaccaggtcaaagaattgctgacatcgtttggtcctctgaaggct
ttcaatttggtgaaagacagcgctacaggcctgtctaagggctatgccttctgtgaatat
gttgacgtcaatatcagtgaccaggccatcgcagggctaaacgggatgcagcttggtgac
aagaaactcctggtccagagggcaagcgtcggttccaagaacactacgctgacgggtata
aaccagactccagtcacacttcaagttccaggcctcatgaacagctctgtgaaccagatg
ggcggcattcccacagaggtgttgtgtctgatgaacatggtggccccagaggagctgctg
gatgatgaagagtatgaggagattgtggaagacgtcagagacgagtgctccaaatacggc
caagtcaagagcatcgagatcccacggcctgtcgacggattggatattcctggcactgga
aagatctttgtggagtttatgtcagtttttgactcccaaaaggcaatgcaaggtttgact
ggaagaaaatccgccaacagagtggtggtgactaaatactgcgaccctgatgcctatcac
cgccgcgacttctggtag
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