Danio rerio (zebrafish): 557127
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Entry
557127 CDS
T01004
Symbol
si:dkey-119f1.1
Name
(RefSeq) Structural maintenance of chromosomes protein 6-like
KO
K22804
structural maintenance of chromosomes protein 6
Organism
dre
Danio rerio (zebrafish)
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dre03400
]
557127 (si:dkey-119f1.1)
DNA repair and recombination proteins [BR:
dre03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
SMC5-SMC6 complex
557127 (si:dkey-119f1.1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMC_N
AAA_23
Laminin_II
Syntaxin_2
Crescentin
AAA_29
AAA_13
ATG16
PEP-utilisers_N
DUF1664
AAA_21
AAA_16
DUF6815
TPR_MLP1_2
Motif
Other DBs
NCBI-GeneID:
557127
NCBI-ProteinID:
NP_001121806
ZFIN:
ZDB-GENE-070705-287
Ensembl:
ENSDARG00000058719
UniProt:
A0A8M1NHD0
LinkDB
All DBs
Position
2:complement(6321855..6457336)
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AA seq
1090 aa
AA seq
DB search
MSKRKSSNSRLTPDKRSRLSQPETEEDGEPIYFSAGDGLSQSQSVTGEVGIIESISLRNF
MCHSLLGPFAFGPNVNFVVGNNGSGKSAVLTALIVALGGKALTTNRGSSLKGFVKEGESS
ADVSITLRNRGRDAYKPEKFGQSIVVDLRISSEGIRTYKLKSHTGQLVSAKKEELVSILD
HFNIQVDNPVSILTQEMSKHFLHSKGEGDKYKFFMKATQLDQMKEDYSYIMKTKTLTQNT
VEKHRETLLELKQKFRDKEERYKSLASLDEMQQKLNELKNQMAWALVAEMEQEMKPMKEQ
ITAEERSTVKYDQKVEEWKGKVDEANKISKQLQDQLESVSERMQQLQPECSELKSRVQER
NRELKTAEAALHRKRTNLRDLEKDKDQLNKRIKELKHSISQMNSADTQARVEKMNHIQAE
LEELSFRDSTLAQQIDQFKQACESAKERHARMSRERQDLQRAIDSKQRDLAAMESSRNNQ
LRRFGEHIPALMEAIDEAHHRGKFRMKPVGPLGFCIRLRDQDLALAVECCLKALMLAFCC
DNHADERELERIMGRFYQRGRRPQIIVSRFTNMLYNVGNRAVSHPDYPTVLQALDIENPV
VANCLIDMRGIETILLIKDNRDARRVMQSKGGQAPRNCREAFTRDGDQVYTNRYYSSEQH
RAQYLSRDVEEEIRHLQSALQTQRAQLDRFQQDMQQVGEEERQNQTLLRRAYDDRKKVQE
RSRKLQAELTELQNVEEPQSEDLKPLEEELEELSGRISVCGEEFEALRRQTQTCKKEYEE
AEKVFRQKKEAVNSIVEEVEPIKERLNNSDQEVERSKHHRKHYEEKRKTHLQMIETLKTS
LNQKEQELQAAIAKASEICPERSDVRRTAKSLDSEINRLKSKINTQQDQQGHRDTIVREY
HEAREKFGKISRQVKGLDAFIHQLSKIMTTRHNVYAEMRMYLSVRCKYNFHSMLSQRGYK
GKMIFDHKNEILSISVQPGEGGKADLSDMRSLSGGERSFSTVCFVLSLWEIAEVPFRALD
EFDVYMDMVNRRISMDMMLKIAASQRYRQFIFLTPQNMSSLPINSLIRVLRLNDPERGHS
ALPFSQRNPE
NT seq
3273 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaagagaaagagcagtaattcacggctaacgcctgataagagaagccggttatca
cagcctgagactgaggaggatggggaaccgatctacttcagcgcaggagatggattgagc
caatctcagagtgtgactggtgaggtgggcattatcgagagcatctctctgagaaacttc
atgtgccattcgttgctcgggccctttgcgtttggtccaaacgtcaactttgtcgtagga
aataatggaagtgggaaaagtgccgtgctgacagctctgattgtagccctgggcggtaaa
gctctcaccaccaaccgaggctcctctctcaaaggatttgttaaggaaggagagagctct
gcagatgtgtccatcacgctgagaaacaggggtcgtgatgcgtacaaaccggaaaagttt
ggccagtccattgtggttgatcttcgaatttccagtgagggaatccgaacgtacaaactt
aaaagccacaccgggcaactggtgtcagcaaaaaaggaggagctggtgtccattctggat
cattttaacattcaggtggataatccggtctccatcctcacgcaggaaatgagcaaacac
tttctgcactccaaaggagagggagacaaatacaaatttttcatgaaagccactcaactg
gatcaaatgaaagaggattacagctacatcatgaagaccaagaccctgacccagaataca
gtggagaaacacagggagactctgctggagctgaagcagaagttccgcgacaaagaagag
cgctataaaagtctggcttctctcgatgaaatgcagcagaagttgaacgagctgaaaaat
cagatggcctgggctctggtggcagagatggagcaggagatgaagcccatgaaagaacag
atcacagctgaagaaagatccaccgtcaaatatgaccagaaggtggaggagtggaagggg
aaagttgacgaggccaacaagatatccaaacagttgcaggatcagctggaaagtgtatcg
gagcgcatgcagcagctgcagccagagtgttcggaactgaagagccgagtacaggagcgc
aaccgagagctcaaaacagcagaggctgcacttcacaggaaaaggactaacttaagagat
ctcgagaaggataaagatcagctcaacaagcgtatcaaagaactcaaacacagcataagt
cagatgaactcggctgacactcaggctcgtgtggagaagatgaatcacattcaggctgag
ctggaagaactgagtttcagagactccactctggcgcagcagatcgatcagttcaaacag
gcctgtgaaagcgctaaagaaagacatgctagaatgagccgtgaaaggcaggacctacag
cgtgcgatcgactctaaacagcgtgacctggccgccatggaaagtagtcgaaataaccag
cttcgtcgttttggcgagcacataccagcactgatggaggctatagatgaggctcaccat
cgagggaagttcaggatgaaacctgtcgggccgcttggtttctgcatacgcctgcgggat
caggatctggccctggcggtggagtgctgtctgaaggctctaatgctagctttctgctgc
gataatcatgctgacgagagagagttggagagaatcatgggccgcttctaccagcgtggc
agaagacctcagatcatcgtcagcagattcaccaacatgctctacaatgtcggcaacagg
gcagtcagtcatcccgattacccaactgtgctccaggcccttgacattgagaatccagta
gtggccaactgcctgattgacatgaggggaatcgaaaccattctgctgatcaaggacaac
agagatgccagaagggtcatgcagtctaaaggaggacaagcaccacgcaactgcagagag
gccttcacacgagatggagaccaggtctacactaaccgctactactcctctgaacaacac
agagcgcagtatctctccagagatgtcgaagaggaaatcagacatttgcagtctgctcta
cagacccagagagcacagttggatcgctttcagcaggacatgcagcaggtcggtgaggaa
gagaggcagaaccaaactcttcttcgcagagcttacgacgaccgcaagaaagtccaggaa
cgttcccggaaacttcaggcagagttgacggaattgcagaacgtggaggaacctcaatca
gaagacctaaaacctctggaggaggaactggaggagctgagcggacgcataagtgtttgt
ggagaggagttcgaagctctgcggagacagacacaaacctgcaagaaggaatatgaggag
gctgagaaagtcttccggcaaaagaaggaagccgtgaacagcattgtagaagaagttgag
cccattaaggagcgtttgaacaacagtgatcaggaggtggagaggagtaaacaccacaga
aaacactatgaggaaaaacgaaaaacccacttgcaaatgatcgagacactaaagacgagc
ctgaatcagaaggagcaggaattacaggctgcaattgcaaaggcctcagaaatctgccca
gagcgctcggatgtgaggagaacggcgaagagtttggacagcgagatcaaccgactgaaa
agcaagatcaatacacagcaggaccaacagggacacagagacaccatcgtcagagagtac
catgaggcgagggagaagtttggtaaaatatcccgccaggtgaagggtctggatgcgttc
atccatcagttatctaagatcatgaccaccaggcacaacgtttacgctgaaatgagaatg
tatctatctgtacgctgcaaatacaactttcactcgatgctgtctcagagaggatataaa
gggaagatgatctttgaccacaagaatgagattctctccatatcagttcagccaggagag
ggtgggaaggctgatctgagtgacatgcgttcgctatctggaggagagcgttcgttttcc
accgtgtgcttcgtcctgtcactgtgggaaattgctgaagttcctttccgtgccttggat
gagtttgatgtctatatggacatggtgaaccggaggatttctatggacatgatgctgaag
atcgcagccagccagcgctacagacagttcattttcctcacaccgcagaacatgagttcg
cttccaataaacagcctgatccgcgtcctgcgactaaacgacccagaacgtggccattct
gctcttccttttagccagaggaacccagagtga
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integrated database retrieval system
