Danio rerio (zebrafish): 557200
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Entry
557200 CDS
T01004
Symbol
limch1b
Name
(RefSeq) LIM and calponin homology domains-containing protein 1 isoform X1
KO
K24422
LIM and calponin homology domains-containing protein 1
Organism
dre
Danio rerio (zebrafish)
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
dre04990
]
557200 (limch1b)
Domain-containing proteins not elsewhere classified [BR:
dre04990
]
LIM domain-containing proteins
Other lim domain-containing proteins
557200 (limch1b)
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
DUF4757
CH
LIM
Motif
Other DBs
NCBI-GeneID:
557200
NCBI-ProteinID:
XP_009289278
ZFIN:
ZDB-GENE-030131-9210
Ensembl:
ENSDARG00000103774
UniProt:
A0A8M3B082
LinkDB
All DBs
Position
14:16813747..17027395
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AA seq
1198 aa
AA seq
DB search
MASPASDAGRHLPLQAHHHHHHQHHHHQHHQTEPAPEPAVREAQRWIEAVTGRSFADRDF
RTGLDNGILLCELLSSIRPGLVKKINRLPTPVAAQDNVVLFLKGCEELGLKGSQLFDPGD
LQDTSTRTNKSPDNNKKLKNVLITIYWLGRAANSSATYNGPTLDLHEFEGLLSQMRKEAE
EWDSPKRSIRDSGYIDCWESERSDSLSPPRHARDDSFDSLDSIGSRSHQTPSPDGLLARG
YSDGRGSDSECDTPQRKIPDVRKDDMLVRRTSCSEPRTAVPFNQYLPNKANQGSYVPPPV
RRPRADRDESRKSWSNATSPVGGERPFSESETLSLELSAVVTGRDVHCVDSQQIDPDSKY
SRASPQNESPPKDPIFLNPQLSDPQIRSPLPKDTLHPSVQPQPQEQSHSDQEKMEEEEKD
RDGWATFCQSPPNPLDTLQSDLQMSHNPTAGNDTRSVSMIDMRSEEDLSPHSQVRHELMH
NQYNKLKEEEDHWQDDLAKWKSRRRSVSQDLIKKEEERKMMERLLSGDGGSQRRKSIKTY
REIVEEKERREQELHDAYRKARTPEEAAAVLHRYAQRFTISEAVLERLKLPKLLERSVSA
DPTRHSSLPISQDISSSFSASPNVLQYLRQQSLPAAKFTSMVEARVTGYSPEKGIVGDAE
CVSDPSRSHGPSLGPKPYRQSRAATAGMRTVKLDERVRVNGEREDDGLGIEKTGPQRNKA
EEEDSSHLQFFSSSCQHTDSDMTDSEVSVVQPTVHMLSSTRTAESPEKHRDTTEIEGRTV
PQVGDVPEFPKVLEINPDETVTDQEKTDERGMSDSLHDVIQMEISAQVSELTAEIPQKST
NESESSRPESYRTKAELAVSAQLTSLSSNPKLRRDFFAQSDMAEKAHENVPPSVLNLVNR
GEHFSWDPEEERNRQERWQKEQERMLQEKYRREQEKLKQEWEQAQKEVEEEERRYHEEEQ
KILEETVTPLTPHSPIAPPVLPKTQSTLHSQPDREYKQGPVEKQPSSENCRQRENGISEA
AQRKTESLQMTVSSPLQSCGSVGQRGQEDQSQDKQPTLQSSQDMPLGNRQIPQQNETWKK
NTTPPKPGGRKRSDSIENIGPNPSTSPSFTDTQAPPSPNRSVSGKKLCSSCGHPLGKGAA
MIIETLSLYFHIQCFKCGICKGQLGDTSTGTDVRIRNGLLNCHQCYIRSRSAGQPTTL
NT seq
3597 nt
NT seq
+upstream
nt +downstream
nt
atggcgagtccagcttcagatgcaggacggcatcttcctctgcaggctcatcatcaccac
caccaccaacaccatcaccatcaacatcatcagaccgaaccggcgcccgaacccgctgtc
cgtgaggcgcagagatggatagaggcagtgaccggcaggagttttgctgacagggacttc
agaacaggacttgacaacggcatcctactgtgcgaactgctgagctcaatcagaccgggt
ctggtgaagaagataaacagactgcccactcctgtagctgctcaggataatgtggtgctc
ttcctgaagggttgtgaggagttgggtttgaagggctcgcagttgtttgatcctggagat
ctacaggacacctccacgcgcaccaacaaaagtccagacaacaacaagaagttaaaaaat
gttctgatcactatctactggctgggccgagcagccaatagcagcgccacatacaacggg
cccaccctggacctgcacgagtttgagggactgctgtcacagatgagaaaggaagcagaa
gagtgggacagcccgaagcgtagcatcagggacagtggttatatagactgctgggagtct
gagcgcagcgattctctctctccgccgaggcacgcgcgagacgactccttcgacagcctg
gactccatcggctcacgctcccatcaaaccccctcgcccgacggcctgctcgcccgcggc
tacagcgatggccgcggcagcgactcggagtgcgacaccccccagaggaagataccggat
gtacgcaaggatgacatgttggtgcggcgaacatcctgcagtgagccacggaccgctgtt
cctttcaatcagtacctgcccaacaaagccaaccagggttcctatgtgcccccaccagtg
cgacgcccgcgtgccgacagagacgaaagccgcaaaagctggagtaacgcaacctcacct
gttgggggagagagacctttcagtgagagtgaaaccctttcgttagagttgtccgctgtg
gtaacaggacgtgatgttcactgtgtagattcacagcaaatagatcctgactctaaatac
tccagagcgtctcctcaaaacgagtctccccccaaagacccaatttttcttaatccacaa
ctcagtgaccctcagattagatccccccttcccaaagacaccctccatccttctgtccaa
ccccaacctcaagagcagagccactcagaccaggagaagatggaggaggaggaaaaggac
agagatggatgggccactttctgccaaagtcctccaaaccccttggatacccttcagagc
gacttacagatgtcccataatccgactgcaggaaatgataccaggagcgtgagcatgatt
gacatgagaagcgaggaagacttgtcaccacatagtcaagttcgacacgagctcatgcac
aaccagtacaacaagctgaaagaggaagaagaccactggcaggatgatttggccaaatgg
aagagtcgcaggaggagcgtgtcacaggacctgatcaaaaaagaagaggagaggaagatg
atggagagactgctaagtggagatggaggatcacagagaaggaaaagcattaagacgtac
agagaaatagtagaggagaaggagcgtcgtgaacaggagctgcatgacgcttatcgaaag
gctcgcacaccagaggaggcagcagctgtgctgcatcgctacgcccagcgattcaccatc
agcgaggctgttctggagcgcctcaaactgccaaagctgctggagaggagtgtgtcggct
gatcccactcgtcactcctctctccccatctcccaggacatctcgtcctctttcagcgct
tcccctaatgtgctgcagtacctaaggcagcagtctcttcccgcagctaagttcacatcc
atggtcgaggcaagggtgacgggatacagcccagaaaagggaattgtgggagatgcagag
tgtgtctcagatccatctcgctcacatgggccatcactgggtccgaaaccttacagacag
agcagagctgccactgctgggatgagaacagtaaagttggatgaaagagtgcgagtgaat
ggggaaagggaagatgacggcctcggcattgagaagacaggaccacagagaaacaaagca
gaggaagaagattcttctcatctacagttcttctcatcttcctgccagcacacagactca
gacatgacagatagtgaagtctctgtagttcagcccacggtccacatgctctcatccaca
cgcacagcagagagcccagagaaacacagagatactacagagattgaaggacggacggtc
ccgcaggtcggagatgtccctgaattcccaaaagtgttggagataaatccagatgagact
gttacagatcaagagaagacagatgagaggggtatgagtgactctctacacgacgtgatt
caaatggagatttctgcacaggtcagtgaactaacagctgagatcccacagaaatcaaca
aatgaatctgagtcatccagacccgaatcatacagaaccaaagcagagttggctgtcagt
gctcagttaacatcgttgtcaagtaatcctaaattgcgcagagatttcttcgcccaatca
gatatggctgagaaggctcatgaaaatgtccctccctcagtgctgaatctggtgaatcgg
ggtgaacacttttcttgggaccctgaggaagagcgcaatcgtcaggagaggtggcagaaa
gagcaggaacgcatgcttcaggaaaagtatcgacgtgagcaggagaagctaaagcaggag
tgggagcaggcgcagaaggaggtggaggaggaggagagacgctaccatgaggaggagcag
aagattctggaagagactgtgacccctttgaccccacactcaccaattgcaccgccagtc
cttcccaaaactcaaagcactttacactcccagcccgatcgggaatataagcaggggcca
gtggagaagcagccgagttctgagaactgcagacaaagggaaaacggcatcagtgaagca
gcacaaagaaagacggagagtttacagatgacagtaagttctcccctccaaagctgtggg
tcagttggtcagagaggacaagaagaccagagccaagataagcagccaacactacagtct
agtcaggatatgccactgggcaatagacagataccccaacagaatgagacatggaagaag
aatacaacaccaccaaaacctggtggacgcaagaggtccgactctatagagaacattggg
ccaaatccatcaacatcaccttcattcacagacacacaagcacctccatcaccaaacagg
tctgtcagtgggaagaaactgtgctcaagttgtggtcacccacttggcaaaggtgcggcc
atgattatagagactctcagcctttactttcacatccagtgctttaagtgtggaatctgt
aagggtcagttgggtgacaccagcacaggaacagatgtgaggatcagaaatggtctgctc
aactgccatcagtgctacatccgctcccgctctgctggtcaacccactacattgtga
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integrated database retrieval system
