Danio rerio (zebrafish): 558436
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Entry
558436 CDS
T01004
Symbol
jmjd1cb
Name
(RefSeq) probable JmjC domain-containing histone demethylation protein 2C isoform X5
KO
K11449
jumonji domain-containing protein 1C [EC:1.14.11.-]
Organism
dre
Danio rerio (zebrafish)
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
dre03036
]
558436 (jmjd1cb)
Chromosome and associated proteins [BR:
dre03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
558436 (jmjd1cb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tudor_KDM3B
PWWP_KDM3B
DUF7030
JmjC
FYVE
zf-C5HC2
C1_2
Motif
Other DBs
NCBI-GeneID:
558436
NCBI-ProteinID:
XP_005156141
ZFIN:
ZDB-GENE-121214-344
Ensembl:
ENSDARG00000079939
UniProt:
A0A8M2B2Y5
LinkDB
All DBs
Position
12:complement(9140856..9370355)
Genome browser
AA seq
2558 aa
AA seq
DB search
MVVGKRFLCVSGEEPLDPAHIAHWSWRAGVIRAVTHRDHDNPELTVYVEFDDLEWDKREW
VKVYEDFQIFLLEHQLVWAKRKEGAQLQGTKAKQIQWPALTFKPLVGKTVFGSITAIEFF
SDRHLDFNADEGACQPYQDEVDSLSPVLRDYPHLHEEVKAWVKDQKVQEIFMQGPYSLNG
YRVRVYRQDSATQWFTGIITHHDLFSRTMVVMNDQVLEPQNVDPFMVQMTFLDDVVHSLL
KGENIGITSRRRSRSSQNSNTAHQTTGGRPSGSTGITQGHYTRAQANSPRPVMNSSGSTP
KQASQAQQQQQQQQQQQQQQTQHAQQQVSQQHHHQQQQQQPQSSPGQQRGSRSTRRKGSD
SSVPDDEKIKDEKSESGGKDSSKNKSKQTNKRRKADEEDKKGSLKRLKTEASDLSESSDS
ENSNKRSVDSSSEHSSENELKCKSTSKVPEEEEKSQGSKSMDELSVINRLSPWDEMQDKS
SKPIALEVTQLAESERLGERRSPLPPLASCTQNQASGPMEVQSCIVKSTVNTLPKDHYGT
GIPRTHTPKCVIDITEDSTTQPSSKENSEAVSALLASQKCDGYIPESRHLVLNTSHLECR
RPDGEQQQNSRNIGSKIEFAHSEVIRPVTSVSESAALGERGKLQQQYTSMVIKNASVTEE
IRKTHKPSPSPDLPKPKSNSSPDILKPKCNPSPDILKSKAHSIHESCKPKPNTSPEVSKH
KQRHPENLPTTGRLALKPEPDIPRSSFKPVPARGAPCESTKSPLVVDKNEHFTVYRDPAL
LRPESDSNHTAYLHPHLHPLHGSSHATCLTPTSHHPTHLLPSSSMSHSVHHPHLLQTVLP
TIPPGSILSSHPRLDSSGLGHLALAHHHPHPPQQYLQQQPPPSLLAQTHGGASYNQLGLY
PIIWQYPNGTHSYPPGYKWVHPENAVNSDSSLRRNTTSPWLHQPTPVTSADSMGILSHVP
GRPASADPHRSIKISSHSSPPLSKTPGELHKEDQEKSVFVDPMRSLASAHLKQEPDRSRT
PTNKELHRLYMESPHNKQQLPPRMPQEGPDRTSKYKEENRRILLESIEMAPFTAKIRAGE
AEHEPFPRPISSQPKSHEKETEHSMADLYKYKHSVSQSLPQTNYFTTLSNSVVNEPPRLF
QSKDLNPYFDKAPPTSSPLSLGSYNPSHTKSLSKPPPLIKHQPEGEGLMGKISEQLSQQA
PIHSLGTSVVTVSDRCSPAISPSNQPKGMPALRRAPVFTPPTQQALDRKEGGYGRLSPPT
LTPIQPVSQAGKVSEQQKPPTLLPELRDEKSGAELGSADSWRTGGEAKSHEKVAWHSENS
QGKPQAAMASVIVRPSTCIKYDGSPGPKMASKEQLGGRLFPGRTQADCLKVAENRESGRV
ILPNTNLEDPSDQYNKNLIRASPGVIPSSVAVVANSVCSTKTNEAIAAASGTFSTQSHNG
PDMSFSISATSVSKRLESSPINSRPPSIVESQKGGSRTTSPSGLPQACSAGTPQAYSRNF
VHLKKAKAALAAAQSRGSSSASESESGSVRSSQDSPTIAQENSTPSNPPSKASPLPNGQA
AQVCQSNYHKLKKAWLTRHSEEDKNTNKPEKGGNAISELIKPCSVNLIAPASGDVDMGKD
SKGQEDKLSQEDRKTRRTPKRPYESCSESGDDSDSSESKLEQRTKRQPKPTYKKKQNDMQ
KRKGDNEKEEDEVKPNGIFRSAKEKTKLKLASTNGIPRSVLKDWRKVKKLKQTGESFLQD
DSCTEIGPNLQKCRECRSIRTKKGEEPTHSPVFCRFYHFRRLSYSKNGVIRIDGFSSPDQ
YDEEAQSIWASDAYEENNLDLETSKYILSYIGDKFCQLVMTENTATTWIKKDAKIAWKRA
VRGVRESCDACEATLFNIHWVCQKCGFVVCLDCYKAKERKSSKDKELYAWLKCVKGQPHD
HKHLMPTQIIPGTVLTDLVSAMHMLREKYSIKSHCSCAGKQNTLFNKLPSTNGVSQVCVL
QNVLNHSNKISLCKPEGGQQNSLKMEANGGSSPASDTSTDSKFTPPESQSPLHFLADLAE
QKSREEKKENKESGVGKMKEEKDQSDALESLHSKASSLEQGSTLRDLLTTTAGKLRLGST
DAGIAFAPVYSNASQIVKSGRSMPNILDDIIASVVENKIPAGRGTKLNLKHEPLEEPKVE
RKKAVEEPPKLYADIPHCWLYERKLLWLKDHRNSGNWKLFRECWRQGQPVLVSGVHRRLN
ASLWKAESFNQEFADHQGDLLNCKDGVMSNSGVKEFWDGFEDLTKRPKAKDGETVVYRLK
DWPSGEEFMALMPSRYDDLMKNLPMPEYSDPEGNLNLASHLPTFFVRPDLGPRLCCAYGV
AASQEQDFGTANLHMEVSDVISVLVYVGVAKGNGVLSKTGVLKRLEEEDLDDNVKKRLKD
SSETPGALWHIYTSKDGEKIKEFLHKVAKEQGVEIAADHDPIRDSSYYLSRKLRQRLLDE
HGIQGWTVVQFLGDSVLIPAGALHQVQNLHSCIQVINDFVSPEHVGHSFHLTQELRSSKE
EMNYEDKLQVKNIFYHCVKDAVGTLKRSCAEEEEESNS
NT seq
7677 nt
NT seq
+upstream
nt +downstream
nt
atggtggtcgggaagcggttcctgtgtgtgagcggagaggagccgctggatcccgcgcac
atcgcgcactggtcatggcgagccggagtcatccgagccgtcactcaccgcgaccacgac
aatcccgaactgacggtttacgtggagtttgacgacctggagtgggataagcgcgagtgg
gtcaaggtctacgaagacttccagatctttctgctggaacatcagctggtttgggccaaa
agaaaagaaggtgcccagctgcagggaacaaaagccaagcagatccagtggccagctctg
acgttcaagcctctggtagggaagacagtgttcgggtccatcacagccatcgagttcttc
tctgacagacacctggacttcaatgcggatgaaggagcctgtcagccctatcaggatgaa
gtggacagtttaagtcctgttctcagggactatccacatctccatgaagaagtgaaagcc
tgggtgaaagaccaaaaagttcaggaaatttttatgcaaggtccctattcattgaatggc
taccgcgtacgagtttacagacaggactcagccacccagtggttcacgggcatcatcacc
caccacgatcttttcagtcgcactatggttgtcatgaatgaccaggtactagagcctcag
aacgttgaccccttcatggtacagatgacctttctggatgatgtggtccattctttactg
aaaggagaaaatatcggtatcacgtcgcgacgcagatctcgctctagccagaacagcaac
actgcccatcagaccacaggagggagaccaagcggctctacaggaatcactcagggtcat
tacacacgtgcccaagccaacagcccgagacctgtgatgaattcctctggctccacaccc
aaacaggcctctcaggcccagcagcaacagcagcagcagcagcagcagcagcaacaacaa
acccagcatgctcagcagcaggtatctcagcaacaccaccaccagcagcagcagcagcag
ccacagtcctcaccaggtcagcaacgcggctcacgatctacacgtcgaaagggctccgac
agtagtgttccagacgatgagaagatcaaagatgaaaaatcagagagtggaggaaaagac
tcttctaaaaacaaaagcaagcaaacaaacaagaggagaaaagcagatgaagaggacaag
aagggcagtctcaagcggctcaaaacagaggcgtctgacctctctgagagcagcgactct
gagaactctaacaagcggagtgtagactcctcatcggagcacagttcagagaatgagctc
aaatgcaagagcacttcaaaagttccagaggaggaggagaagtcacagggatccaagtcc
atggatgagttgagtgtcatcaataggctgtccccctgggatgagatgcaggataaaagc
agcaagccgatagctttggaggtgactcagctggcagagagtgagcggttgggagaacgg
agatctccgctccctcctctggcctcctgtacacagaaccaagcctcgggaccaatggag
gtccaaagctgcattgtgaaaagcactgtgaacaccctccccaaggaccattatggcaca
gggatacctcggacgcacacacccaagtgcgtgattgatatcacagaggattccaccacg
cagccaagttcaaaagagaactctgaggctgtatcagccctattggcgtcacagaaatgt
gatggctacatccctgaatccagacatttggtgctaaacacctcccatttagagtgcagg
aggccggatggtgagcagcagcagaactctcgcaacataggcagtaaaatcgaattcgcc
cactctgaggtcataaggccggtgacatcagttagtgagtcagcagccctgggtgagaga
gggaagctccagcagcagtacacttctatggttattaaaaatgcctccgttacggaggag
atcaggaaaacccataaacccagtccttcccctgacttgcccaaacctaaatcaaactca
tcccctgacatcctcaagcccaagtgcaatccttcacctgacatcttaaagtcaaaagct
cacagcattcatgaatcctgcaagcccaaaccaaatacgtcccctgaggtgtccaaacat
aaacagcggcatcctgaaaacctacctacaacaggccgcttggcactcaaacctgagcca
gacataccccgatctagttttaaacctgttccagcccgtggggcaccatgcgagtccaca
aaaagcccacttgttgttgacaaaaatgagcattttacagtgtaccgggaccctgcattg
ctgcggcctgaatcagacagcaaccacaccgcatacctgcacccgcacctgcatccacta
cacggttcttctcacgccacctgtctcactcccacctcacaccacccaactcatcttctc
ccttcttcctccatgagccactctgttcaccacccacacctgctgcaaaccgtgctgccc
acaattccaccaggctccatcttgagcagccatccccgcctggactcttctggacttgga
cacttggccctagcccaccatcatccccacccgccacagcagtacctccagcagcagcca
cccccttccctgcttgctcagacacatggaggtgcctcatacaaccagcttggcctctac
cccatcatctggcagtacccaaacggtacccactcctacccacctggatacaagtgggta
catccggagaatgctgtcaattcagactccagcctgaggaggaacactaccagcccctgg
ctgcaccagcccacccctgtaacctcagcagatagcatggggattttgagccatgtcccg
ggaagaccagccagtgcagatcctcatcgatccattaagatcagctcacactccagcccg
ccgctctccaaaacccccggagaactccacaaagaagatcaggagaagagtgtgttcgtg
gaccccatgcgtagcctggccagtgctcacctgaagcaagagccagaccgcagccggaca
cccaccaacaaggagctgcaccgtctctacatggagtccccccacaacaagcagcagcta
ccaccacgtatgcctcaggagggacctgaccgcaccagcaaatacaaggaggagaaccgc
cgcatcctactggagagcattgaaatggcccccttcaccgccaagattcgtgctggggag
gctgagcatgagccctttccacgtcctatttcctcccagcccaaaagccacgagaaagag
acagagcactctatggctgatctgtacaagtacaaacactctgtatctcagtctctccct
caaaccaactactttactaccctgtcaaatagtgttgttaatgaaccaccacgacttttt
caatccaaagatcttaatccgtactttgacaaggcacccccgacctctagccccctgtct
ttgggctcgtataaccctagtcataccaagtctttgtccaagcctccacctctcattaag
catcagccagagggagagggactgatgggcaagatctctgaacagctcagtcaacaagca
cccatacactcactcggtacctcagtggtgacagtcagcgatcgctgtagccctgccatc
tctccctccaatcagcctaagggtatgccagccttgcgtagagcgccagtctttactccg
cccacccagcaggcgcttgaccgcaaggaggggggctacggtcgactttccccacctaca
ctcacccccatccagcccgtgagtcaggcagggaaagtgtcagaacaacagaagccgccc
accctgctcccagagctcagggatgaaaaaagcggagccgagctgggctcggcagactcc
tggcggactggcggggaagcaaagagccatgagaaagtggcctggcattcagagaatagc
caagggaagccacaggcagccatggcatctgttattgttcgcccttctacttgcataaaa
tacgacggctcgccaggtcctaagatggcctccaaagagcaacttggtggcagattgttt
cctggacgcactcaggcggactgcctgaaagtggcagagaacagggaatctgggagagtc
atcctaccaaacacaaatttggaggatcccagtgatcagtacaacaaaaacctgattaga
gcatcaccgggtgtcattcccagctcagtggcagttgtggccaattctgtgtgcagcact
aagactaatgaagccattgctgctgccagcggcacatttagcacgcagagccacaatgga
ccagatatgtccttttccatctctgccactagtgttagtaagagactggagagctctcct
atcaatagccgtcctccctctattgttgagtcacagaagggaggttcgagaaccacctcc
cctagtggcctgcctcaggcctgctccgctggcaccccacaggcctactcaagaaatttt
gttcacctaaagaaggccaaagccgctctggctgctgcacagtctcgtggctccagcagc
gcttctgaaagtgagagcggtagcgtcagatcctctcaggactcacccacaattgcccag
gagaattccacgcccagcaatcctcccagcaaagccagcccgttgcccaatggacaggca
gcgcaggtgtgccagtctaactaccacaaactcaagaaagcctggctcacacgacactca
gaggaggacaaaaacacaaacaaacctgaaaagggtggcaatgccatttctgagctaatt
aagccatgttctgtcaacctgattgcccccgcatccggcgatgttgatatgggcaaggac
agcaaaggacaagaggacaagctgtcccaggaggacagaaagacacgccgtacccccaag
cgtccatatgaatcgtgttcagagagtggcgatgactcagactccagcgagagcaagctg
gagcaaaggactaaacggcaacccaagcccacttacaaaaaaaagcagaacgacatgcag
aaaaggaagggagacaatgagaaggaggaggacgaggttaaacccaatggtattttccgg
agtgccaaggaaaaaaccaaactcaagctggccagtactaatggcattccccggtcagtg
ctgaaggattggagaaaggtaaagaagttaaagcagacgggtgagtccttcctacaggat
gattcatgcacagaaattggacccaacttacagaagtgcagagagtgccgctccatccgc
accaagaagggagaagaacctactcactcacctgtcttctgccgcttctaccacttccgc
cgcctctcgtacagtaagaacggagtgatccggatcgatggcttctcctctcctgatcaa
tatgacgaagaggctcaaagtatctgggcgtcagacgcttatgaagaaaacaacctggac
ctggaaacctccaaatacatcctcagctacattggagacaaattctgtcagctggttatg
actgagaatacagcgactacgtggataaagaaagatgccaagatcgcctggaagagagcg
gtgcgcggggtgagagagagctgcgacgcatgtgaagccacattgtttaacattcactgg
gtctgccaaaaatgtggatttgtggtgtgtttggactgttataaggccaaggagaggaag
agctccaaagataaagagctgtacgcctggttgaagtgtgtcaagggacagcctcatgat
cacaagcacctgatgccaacacagatcattcctggaactgttctaacggacctggtgagc
gctatgcacatgctcagggagaaatacagcattaaatcacactgctcgtgtgctgggaag
cagaacaccctcttcaacaagctgccctcaactaatggcgtctcccaggtatgtgtgtta
cagaacgtgctcaatcacagcaacaagatctctctgtgtaagcccgagggcggccagcag
aactctctgaagatggaagccaacggtgggagcagtcccgctagcgacaccagcaccgac
agcaagttcactccacccgagtcccagtcgcctctgcacttcctggctgatctggccgag
cagaagtcccgtgaggaaaagaaggaaaacaaggagtcaggtgtagggaagatgaaggaa
gagaaagatcagtcagatgctttggagtctctacacagcaaagcatcgtccctggagcag
ggatcaaccctacgagacctgctcaccaccaccgcaggcaagctgcgcctgggctctact
gatgctggcatcgcattcgctccggtgtactccaatgcctcgcagattgtcaagagtggc
cgcagcatgcccaacatcctggatgacatcatcgcctctgtggtggagaacaagatcccg
gcaggccgtggcacgaagttaaacctgaagcacgagcctctggaggagcccaaagtcgag
agaaagaaagcagtagaagagccacccaaactgtacgctgacatcccccattgctggcta
tacgagcgcaagctgctctggctcaaagaccaccgcaacagcggcaactggaaactcttc
agggagtgctggagacaaggacagcctgtactagtctctggggtgcaccgaaggctcaac
gccagcttgtggaaagcagagtccttcaaccaagagtttgctgaccaccagggggacctc
ttgaactgcaaggatggagtaatgtccaactcaggtgtcaaagaattctgggacggcttt
gaagatctcacaaagcgacccaaggctaaagacggagaaactgttgtgtatcgattgaag
gactggccttcaggggaagagtttatggctttgatgccttccaggtatgatgatttgatg
aagaacctccccatgcctgaatattcagacccggagggaaacctcaacctggcctcccat
ctgcccaccttttttgtgcggccggatctgggccctcgcctctgctgcgcatatggtgtg
gcagcgtctcaggagcaggatttcggcactgctaacctgcacatggaggtgtctgacgtg
atcagcgtgctggtttacgtcggagtggcaaaagggaatggcgtcttgtccaaaacagga
gtgctgaagaggctggaggaggaagatctggatgacaacgtcaagaaaagattaaaggac
tcgagcgagactccgggagccttgtggcacatctacaccagcaaagacggcgagaagatt
aaagagttcctgcacaaggtggcgaaagagcagggtgtggagatcgcagcagatcacgac
cccatccgtgattccagctactacttgagccgaaagctacgtcagcggctgctggatgaa
catggcattcagggctggactgtggtgcagtttctgggtgattcagtcctgatcccggca
ggagctctgcaccaggtgcagaatcttcacagctgcattcaggtgatcaatgacttcgtg
tctccagagcacgtggggcattccttccacttaacacaagaactcagatcctccaaagag
gagatgaactacgaagataagctacaggtcaagaacatcttctaccactgcgtgaaggac
gccgtgggcacattgaagaggagctgtgctgaggaggaagaggagagcaactcatga
DBGET
integrated database retrieval system
