Danio rerio (zebrafish): 558924
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Entry
558924 CDS
T01004
Symbol
abca1a
Name
(RefSeq) phospholipid-transporting ATPase ABCA1a
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
dre
Danio rerio (zebrafish)
Pathway
dre02010
ABC transporters
dre04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
558924 (abca1a)
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
558924 (abca1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
dre02000
]
558924 (abca1a)
Transporters [BR:
dre02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
558924 (abca1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
DUF4162
DUF7447
AAA_23
Motif
Other DBs
NCBI-GeneID:
558924
NCBI-ProteinID:
NP_001296394
ZFIN:
ZDB-GENE-031006-12
Ensembl:
ENSDARG00000074635
UniProt:
B8A446
LinkDB
All DBs
Position
1:52560549..52628407
Genome browser
AA seq
2268 aa
AA seq
DB search
MAVSTQLGLLLWKNFTYRRRQTIQLLVEIIWPLFIFFILISVRLYYPPYEQHECHFPNKA
MPSAGTLPWVQGIICNANNPCFRYPTPGETPGVVGNFNDSIISRLFTDAKKILLYSQQDK
SFEGFKGLVRALRKLQRNTEGFKLKDFLHDNETLSAFLEKNATLPKHAVRQIVEANVNLE
KVLIKGFGVHLTDLCNSTSLEEFVTIADKDVSQLTQNIICQSPADWLNNAEQHFLSNLDF
LKPIRKDVKSDPKIIKDVSIATDSLLESLGALAVELASMKSWRDMRNEILYLTGNSTQSP
NHMYQAVSRIVCGHPEGGGLKIKSLNWFEDNNYKALFGNNGNDSDSEPASVYDNSSTPYC
NNLMKGLESSPISRMIWRALKPLLMGKILYTPDTPATQRIIHEVNKTFQELGVLRDLGGM
WEEMRPKIWNFMENSEEMDLVRTLLQNNASARFFNAKLSGTEWRVEDVSRFLSKSSEDTR
PHGTAYTWREVFNETDQAIQTISRFMECVNLDKLEPVANEERLVNKSMRLLDDRKFWAGI
VFPDMQSNTSDLPLNVNYKIRMDIDNVERTNKIKDGYWDPGPRADPFEDLRYIWGGFTYL
QDVIEHGIIRALTGSKEKTGVYIQQMPYPCYVDDIFLRVMSRSMPLFMTLAWMYSVAIII
KGVVYEKEARLKETMRIMGLDNGILWLSWFISSLIPLLISAALLVLILKMGNLLPYSDPG
VIYLFLSSFAVVTIMQCFLISTLFSRANLAAACGGIIYFTLYLPYVLCVAWQNYVGFGAK
IVVSLLSPVAFGFGCEYFALFEEQGVGIQWSNLLSSPMQEDSYNLTTSICLMLFDSVLYA
VMTWYIEAVFPGQYGIPRPWYFPFTKSYWCGEKCGWTTSVPSNRKENAEAVCIEEEPAHI
DPGVYIENLMKIYSNGKVAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGT
AYIQGKDIRTDLNAIRQNLGVCPQHNVLFSMLTVEEHIWFYARLKGLSAEKVKSEMEQIV
MDLGLPHKRTSRSNQLSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYARRGIWDLLLK
YRQGRTIILSTHHMDEADILGDRIAIISHGKLCCVGSSLFLKTQLGTGYYLTLVKKDFDL
SASSCRTSSSTVSYSKGSLKKDDSVSESSSDAGLGSDHESETTTIDISLISNVIFKHVPT
ARLVEDLGHEITYVLPYESAKDGAFVELFHEIDDRLTDLSISSYGISDTTLEEIFLKVAE
DCGVDAETSDGTLPARRNRRHAFGDHQSCLKPFTEDDFDFNDSEGDPESRETDWLDGADG
KGSYQVKGWSLKRQQFVALLWKRLLYARRSRKGFFAQIVLPAVFVCIALVFSLIVPPFGK
YPSLALEPSMYEEQFTFISNDAPEDRHTNRLLDALKDSPAYTDQCTDGKNTASRSCPIKD
GEWLVPEVTESIEAIFLNGNWSMENPSPLCECSCEGRKKMLPECPPGAGGLPPPQIKVTH
DETLQNLSGRNISDYLVKTYAQIIGKSLKNKLWVNEFRYGGFSLGARNTQALPPGDELTD
AISHIRSRFSLESGTAADRFLGSLSTFIRGLDTNNNVKIWFNNKGWHSIGSFLNVMNNAV
LRANLPPGLDRSKFGINAFNHPLNLTKEQLSHVALMTTSVDVLVSICVIFAMSFVPASFV
VFLIQERVNKAKHMQFISGVQPFLYWLANFVWDMCNYIVPATLVIIIFVCFQQEAYVSST
NLPVLALLLLLYGWSITPLMYPASFFFKIPSTAYVVLTSVNILIGINGSVSTFVLELFGS
NEIGGINDILKNVFLIFPHFCLGRGLIDMVKNQAMADALERFGENRFRSPLAWDMVGKNL
FAMAIEGVIFFSITVLIQYRFCIKARSLSTKLKPIGEEDEDVARERQRILGGGGQTDILE
LRQLTKVYKRKQKPAVDRLCVGIPPGECFGLLGVNGAGKTSTFKMLTGDSVVTSGEAYLA
GNSVLTEIDEVHQNMGYCPQFDAINDLLTGREHLEFYAILRGVPEKEVCKVADWGIRKLG
LMKYVDKAAGSYSGGNMRKLSTAMALIGGPPVVFLDEPTTGMDPKARRALWNCILSIIKE
GRSVVLTSHSMEECEALCTRMAIMVNGRFRCLGSVQHLKNKFGDGYTIILRVAGADPRLE
PVMEFIERELPGSTLKEKHRNMLQYQLSSSLTSLARIFNILSKNKEQLHIEDYSVSQTTL
DQVFVNFAKDQSDEDHLKDISMNKNDAVVDISKLNAFLTDEKAKETVV
NT seq
6807 nt
NT seq
+upstream
nt +downstream
nt
atggctgtctccactcagttgggtttactgttgtggaagaacttcacctacagacggaga
cagactattcagctgctggtcgagatcatatggccacttttcatctttttcatcttgata
tctgtcagactctactatccgccatacgagcaacatgaatgccattttcccaataaggct
atgccctctgcagggactttaccgtgggttcagggcatcatctgcaatgccaacaacccc
tgctttcgctacccgactccaggagagacgcccggggttgtgggcaacttcaatgactcc
atcatctcccgactgttcaccgatgccaagaaaattctcctctacagccaacaagacaag
agcttcgaaggtttcaaaggactcgttcgagccttgagaaaactgcagagaaacactgaa
ggtttcaaactgaaggatttcctccatgataatgaaacgctgtctgcctttctggagaaa
aatgccaccctgcccaagcatgcagtgagacagatagtggaggccaacgtcaacttggag
aaggtgcttattaaaggattcggcgttcatcttacagacctgtgcaattccacgtctctg
gaagagtttgtgactatagccgataaagacgtgtctcaactgacgcaaaacatcatctgc
cagtcgcccgctgattggctgaacaacgcagagcaacacttcctgtccaacctggacttc
ctgaagcccattcggaaagatgtcaagtcagacccaaagatcatcaaagatgtgtccatt
gctacagacagtctgctggagagtctgggggctttggcagtggagttggcgagtatgaag
agctggcgcgacatgcggaatgagatcctctacctgacgggcaacagcacgcagtcacca
aaccacatgtaccaggccgtgtcccgcatcgtctgcggccatccggagggtggcggatta
aagatcaagtccctcaactggttcgaagacaataactacaaagccctgttcggaaacaat
ggcaacgacagtgacagcgagcccgcatctgtttacgacaactcctccacgccgtactgc
aacaacctgatgaagggtcttgagtcgagtcccatttcccgcatgatctggagggccctg
aaaccgctgctcatgggaaagatcttgtacacaccagacactccggccacacagaggatc
atacatgaggtcaataagacgtttcaggagctcggtgtactccgtgacctcggcggcatg
tgggaagaaatgagacccaaaatctggaacttcatggagaacagtgaggagatggacctc
gtccggacgctgctccagaataacgccagcgctcgtttcttcaatgctaagctgagcggg
acagaatggcgcgtggaggatgtgtcccgcttcttgtccaagtcttcagaggacactcgt
ccacatgggacagcgtacacatggagagaagtgttcaacgagactgaccaggccatacag
accatctcccgcttcatggagtgtgtgaacttggataagttggagccggtggcgaacgag
gagcgtctggtcaataaatccatgcgtctgctggatgaccgcaagttttgggcaggaatc
gtgtttcccgacatgcaatccaacacgtctgatctgccactcaacgttaactataagatc
cgcatggacatcgataacgtggagcgaaccaataagatcaaggacggatattgggatccg
ggtcctcgagctgacccatttgaggacttgcgttacatctggggcggcttcacatacctg
caggacgtgattgagcacgggatcatcagagctctgaccggcagcaaggaaaaaaccgga
gtctacatccagcagatgccgtatccctgctatgtggatgacattttcctgcgggtcatg
agccgctccatgcctctcttcatgactctggcctggatgtactcggtggccatcatcatc
aagggtgtggtgtatgaaaaagaggcccgactcaaggagaccatgcggatcatgggtctg
gataacggcatcttgtggctgagctggttcatcagcagcctgataccactgctcatcagc
gccgccctgctggtgctcatcctgaagatggggaatctcctgccgtacagcgaccccggc
gtcatctacttgttcttgtcctcttttgcggtggtgaccatcatgcagtgtttcctgatc
agcacactcttctctcgtgccaatcttgccgccgcctgcggaggcatcatttacttcacg
ctttacctgccctatgtgctctgcgtcgcctggcagaactacgtgggcttcggtgccaaa
atagtagtgagtctgctgtctccagtggcgttcggcttcggctgtgagtatttcgctctg
tttgaggagcagggtgtgggcatccagtggagtaatctgctgtccagccccatgcaggag
gacagctacaacctgaccacctccatctgcctcatgctcttcgattcggtgctctacgcc
gtcatgacctggtacatcgaggccgtctttccaggtcagtatggcatccctcgaccctgg
tacttccctttcaccaagtcatactggtgcggagagaaatgcggatggacaacatcagtg
ccaagtaacaggaaagaaaacgcggaagctgtgtgcattgaggaagagccagcccatata
gatcctggtgtttacatcgagaacctgatgaagatctacagcaatggtaaagtggcagtg
gacggtttgactctgggcttttatgagggccagatcacttctttccttggccacaacggc
gctggaaaaaccacaaccatgtcaatcctcaccggcctgtttccaccgacttctggcact
gcgtacatccagggcaaagacatccgcacagacctgaatgccatccgccaaaacctgggc
gtctgtcctcagcataacgtcctgttcagcatgctgaccgtggaggagcacatctggttt
tatgcgcgtctgaagggtttgtctgcggagaaggtgaagtctgagatggagcagatcgtg
atggacctcggccttcctcataaacgcacatctcgctccaaccagctctcaggaggaatg
cagaggaagttatcagtcgcgctggccttcgtcggaggctcaaaagtggtgattctggat
gaaccgactgctggagttgatccttacgcccgccgtggcatctgggacctgctgctgaaa
taccgccaaggtcgcaccatcatcctgtccacacaccacatggatgaagccgatatactg
ggcgaccgcatcgccatcatctctcatggcaagctgtgctgcgtgggctcctctctgttc
ctcaagactcagctgggcacgggttactacctgacgctggtcaagaaagacttcgatctg
tccgccagctcctgccgcacctccagcagcacggtctcctactccaagggaagcctcaag
aaggatgacagcgtatctgagagcagttctgatgccggactgggcagcgaccatgaaagc
gaaaccaccaccatcgacatctccttgatctccaatgtgatcttcaagcacgttcctaca
gccagactggtggaggatctcggccacgaaatcacgtacgttctgccatatgaatctgcc
aaagatggagcattcgtggagcttttccacgagatcgacgaccggctcacagacctcagc
atctccagctacggcatctcggacaccactctcgaagagattttcctgaaagtggctgag
gactgcggtgtggatgctgaaacctcagacgggactctgcctgcacgcaggaaccgcaga
catgcattcggggaccatcagagctgcttgaagccttttactgaagacgactttgatttc
aacgactctgaaggggatccagagtctcgtgagactgactggttggatggtgctgatggt
aaaggctcgtatcaggtgaagggctggagtctgaagcggcagcagtttgtggctttgctc
tggaaacgtttactgtacgcccgacgctcacgcaaaggtttctttgctcagattgtgctt
cccgctgtgttcgtgtgcatcgctctggtcttcagcctcatcgttcctcctttcgggaaa
tatcccagcctcgctctggagcccagcatgtatgaggagcagttcacctttatcagtaat
gacgcaccagaagacagacacacaaacaggctgcttgatgctctgaaggacagtccggct
tatactgaccagtgcacagatgggaaaaacacagctagcagatcgtgtccgattaaagat
ggagaatggctggttccagaggttaccgagagcattgaggcaatattcctgaatggaaac
tggagtatggaaaacccttctcctctgtgtgagtgcagctgtgaaggacggaaaaagatg
cttccggagtgtccgcctggagcaggaggccttccaccgcctcagattaaagtcacccat
gatgaaaccctgcagaatctgtctggaagaaacatttcagactatttggtgaaaacatac
gcacagattattgggaaaagtttgaagaacaagctctgggtcaacgaattcagatatggt
ggcttctcattgggtgcacgaaacacacaggctctcccacctggcgatgagctcactgat
gccatctctcacatccgcagccgcttcagtcttgagtcgggcaccgcagccgaccgcttt
ctgggaagcctgtcaacttttatccgaggtctggataccaataacaatgtgaagatctgg
ttcaataataaaggctggcacagtatcggatcattcctcaacgtcatgaacaatgccgtc
ctgcgtgctaatcttcctcccggcctggatcgctccaaatttggcatcaacgcatttaac
catccactcaacctcaccaaagagcagctctcgcatgtggcactaatgaccacctcggtg
gatgtgctggtgtccatctgcgtcatcttcgccatgtccttcgttccagccagtttcgtg
gtgttcctcatccaggagagagtgaataaagccaaacacatgcagttcatcagcggagtg
cagccgtttctctactggctggccaactttgtctgggacatgtgcaactacattgtcccg
gcgactctggtgatcatcatcttcgtctgtttccaacaagaggcatatgtgtcttcgaca
aacctgccggttcttgctcttctgctgcttctgtatggatggtccataacgcccctgatg
tacccagcttcattcttcttcaagatcccaagtacagcatatgtggttctgaccagcgtc
aacatcctcattgggataaacggcagcgtatccacattcgtcctggagcttttcggcagc
aatgagatcggcggcatcaatgacatcttgaagaacgtgtttctgatcttccctcatttc
tgtctgggtcgaggactcattgatatggtgaagaaccaagctatggctgacgcgctggag
cgattcggagagaatcgtttccgctctcctctggcgtgggacatggtgggcaagaatctg
ttcgctatggccatcgagggcgtgattttcttcagcatcaccgtcctcatccagtaccgc
ttctgcattaaggccaggtcacttagcactaagctgaagccaatcggagaggaggatgag
gacgtagcccgagagaggcaaaggattctgggaggaggaggacagactgatatcctggag
ctcaggcagctcaccaaggtgtataagaggaagcagaagccagctgtagacagactgtgt
gtgggaatcccacctggagagtgttttgggttgctgggtgtgaatggagccggaaagacg
agcaccttcaagatgctaaccggagactctgtggtcaccagcggagaggcctacttagca
ggaaacagcgtgctgacggagattgatgaagtgcatcagaatatgggctactgcccgcag
tttgatgccatcaatgacctgctgacgggcagagagcatctggagttttatgccatcctg
cgtggcgtccctgagaaagaagtgtgcaaggtcgcagattggggcatccgcaaactgggc
ctgatgaagtatgtggacaaagcagcaggaagctacagcggaggaaacatgaggaagctt
tccaccgccatggcgctcattggaggaccgccggtggtgttcttggacgaacccaccact
gggatggaccccaaagcacggcgggccctgtggaactgcatcctcagcatcattaaagag
ggacgctccgtcgtgctgacctcacacagtatggaggaatgtgaagctctttgcactcgg
atggccatcatggtgaacggcaggttccgctgtctgggcagtgtgcagcatttaaagaac
aagtttggtgacgggtacaccatcatcctgcgggtggcaggcgccgatccgcggctggag
ccggtgatggagttcatcgagcgggagctgccgggcagtacgctgaaggagaaacaccga
aacatgctgcagtaccagctgtcctcatccctgacctccctcgctcgcatcttcaacatc
ctctccaagaacaaagagcagctccacatcgaggactactccgtctcacagaccacttta
gaccaagtttttgtcaattttgccaaggaccaaagtgacgaggaccacttaaaagacatt
tccatgaacaaaaatgatgccgttgtggacatttcgaaactgaacgccttcctcacagac
gagaaggccaaagagacagtggtgtga
DBGET
integrated database retrieval system
