Danio rerio (zebrafish): 558960
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Entry
558960 CDS
T01004
Symbol
slc6a11a
Name
(RefSeq) solute carrier family 6 member 11a
KO
K05045
solute carrier family 6 (neurotransmitter transporter, betaine/GABA) member 12
Organism
dre
Danio rerio (zebrafish)
Pathway
dre04082
Neuroactive ligand signaling
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04082 Neuroactive ligand signaling
558960 (slc6a11a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
dre02000
]
558960 (slc6a11a)
Transporters [BR:
dre02000
]
Solute carrier family (SLC)
SLC6: Sodium- and chloride-dependent neurotransmitter transporter
558960 (slc6a11a)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
SNF
Motif
Other DBs
NCBI-GeneID:
558960
NCBI-ProteinID:
NP_001091857
ZFIN:
ZDB-GENE-030131-3729
Ensembl:
ENSDARG00000074002
UniProt:
A5D8R6
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Position
6:43184958..43202159
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AA seq
590 aa
AA seq
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MAGSSTRRTGNQQADITPEERGQWANKIEFLLTVAGAIIGLGNVWRFPYLCYKNGGGAFF
IPYVLYLVTCGIPLFVLETSLGQYTSQGGIMCWRKVCPLFEGMGYASQLIIVYGSITYII
IIAWAFLYLFSSFNVELPWASCNNPWNTDTCIVLSGRNSSSELASPLNSSSSVMEFWHHR
VLRLSSGVEHLGTVRWDLALILLLVWILVYFCIWKGVKSTGKAVYFTATFPYVMLLILLL
RGVTLPGALNGIYYYMYPDLTRLADPQVWMDAGTQIFYSYAICLGYLSSLGSYNQYNNNC
YRDSFYLCLLNSGTSFLGGFAIFSVLGHMAQEQGVDISLVAESGPGLVFIVYPQAVTMLP
LSQFWAVCFFIMIILLGLDSQFVGLESIMTSVTDIFPTVLRRGFRREMLLLGICLVCYFM
GLLMITEGGLYIIQLFDHYVCSGTTLLFLATCQSVAIGWVYGADRFYENIQDMIGYKPWP
MVKYCWLYVTPSVCVGTFIFSLVKYSPLKFNNKYMYPWWAYGIGWFLAVSSLSLIPINMI
YKLHKGKGTFWERLQLACSPAEDLPQSQRPSAHHYTLSASTDREKSPDNL
NT seq
1773 nt
NT seq
+upstream
nt +downstream
nt
atggcaggctcctccaccaggcggacagggaaccagcaggctgatataactcctgaagag
cgaggccaatgggcaaacaagattgagtttctgctgactgtagccggagctattattggg
cttggaaatgtttggaggtttccatatctttgctataaaaatggaggaggggcttttttc
attccatatgtcttgtacctggttacctgtggtatcccgctttttgtgcttgagacatct
ttgggtcagtacaccagtcagggaggcatcatgtgctggagaaaggtctgtccacttttt
gaaggaatgggttatgccagtcagctgattattgtgtatggctccatcacctacatcatc
atcatagcgtgggccttcttgtatcttttctcatcctttaatgttgagctgccctgggcc
agctgcaacaatccgtggaacacagatacttgtattgtgcttagtgggaggaattctagt
tcagagttggcatctcctcttaattcctcttcctccgtcatggagttctggcatcacaga
gtgttgcgactgtccagtggagttgagcatttgggcacagtaaggtgggatttggctctt
attctccttcttgtctggatcctggtctacttctgcatctggaaaggcgtgaaatcaact
ggcaaggcagtctatttcacagcaacattcccttatgttatgctcttgatactgctgtta
cggggggtcactttacctggtgccctcaacggcatctattattacatgtatccagatctg
acacgactagcagacccacaggtatggatggatgctggtacgcagatcttctactcgtat
gccatttgtctgggttacctcagctctcttggaagctacaatcaatataataataactgc
tacagagactccttctacctgtgcttgctgaacagtggaaccagttttttgggtgggttt
gccattttctctgttctgggtcacatggcacaggagcaaggggtggatatttcccttgtg
gctgaatcaggtccaggactggtgtttatagtttatcctcaggcagtgaccatgctgccg
ttgtctcagttctgggctgtgtgtttcttcatcatgatcatcctcttgggtttggacagc
cagtttgtaggactggagagtataatgacatcagtgacagacatatttcccactgtactg
agacgcggcttcagaagagagatgctgcttttagggatttgcctggtctgctatttcatg
ggtcttcttatgatcacagagggcggtctgtacattattcagttatttgatcattacgtg
tgcagtggaaccactctcctctttctggccacctgtcagtctgtggctattggctgggtg
tatggtgctgaccgattctacgagaacatacaagacatgattggctacaaaccctggcct
atggtgaagtactgctggctctatgtcaccccgtcagtctgcgtaggcacatttattttc
tctttggtcaaatacagtcccctgaaatttaacaacaaatatatgtatccatggtgggca
tacggtatcggctggttcctggcggtgtcctctctctccctcattcccatcaacatgatc
tacaaactccacaaaggaaaaggaaccttctgggagcgtctccagttggcctgcagtcca
gcagaggatcttcctcaatctcagagaccctcagcacatcattacactctctcagccagt
acagacagagaaaagagcccagacaacctttaa
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