Danio rerio (zebrafish): 559653
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Entry
559653 CDS
T01004
Symbol
skic2
Name
(RefSeq) superkiller complex protein 2
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
dre
Danio rerio (zebrafish)
Pathway
dre03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
559653 (skic2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dre03019
]
559653 (skic2)
Enzymes [BR:
dre01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
559653 (skic2)
Messenger RNA biogenesis [BR:
dre03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
559653 (skic2)
mRNA degradation factors
3'-5' decay
Ski complex
559653 (skic2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
Ski2_N
DEAD
MTR4_beta-barrel
Helicase_C
MTR4-like_stalk
DEXQc_Suv3
ResIII
DUF3516
HTH_23
Motif
Other DBs
NCBI-GeneID:
559653
NCBI-ProteinID:
NP_001038366
ZFIN:
ZDB-GENE-010430-5
Ensembl:
ENSDARG00000062206
UniProt:
Q1LWQ1
LinkDB
All DBs
Position
19:complement(26872683..26923086)
Genome browser
AA seq
1230 aa
AA seq
DB search
MDKIDLPPVGPDDLPLSLLEMGCSGRFELITHTLPKNKPLPPHSTLPHGLPPTCLDLKTE
VEKRFLRDPAWLPVHDVDDAFNKFLKISKREKEVDSLLHCSLSQLHSGLSVVRDPTTGML
LDFTEVLLEDTGLSAKNSLSLQRQPGPPSESLRGSNTNYPFLPAGMEELTLEQIKNKSEL
EEDIDFEKDLMTVPPGLKAGMDFSDKEARNTKSEVNLLSLLSTFDDVLDAPPEDKEGVSQ
KEEIVKLPRTNSLEDLGIKDSGSSQPQGNTGSLTEQKKKNLEEEKGDNKKWAIPVDISSP
CADFYKRIPDPAFKYPFELDVFQKQAILRLEAHDSVFVAAHTSAGKTVVAEYAIALSQKH
MTRTIYTSPIKALSNQKFRDFKNTFGDVGLLTGDVQLNPEGSCLIMTTEILRSMLYNGSE
VIRDLEWVIFDEVHYINDAERGVVWEEVLIMLPEHVSIILLSATVPNAVEFSEWIGRIKK
RHIYVISTIKRPVPLEHYLYTGNSTKTQKELFMLLDATGNFLTKGYYAAVEAKKERTSKH
AQSFGTKNVSQHNTTASQRQQTPVVAFTFSRTRCDENARSLTSLDLTTSIEKSEIHSFLQ
KSLTRLRGGDRQLPQILLMRDLLKRGIGVHHSGILPILKEVIEMLFSRGLVKVLFATETF
AMGVNMPARTVVFDSIRKHDGTGFRNLLPGEYIQMAGRAGRRGLDATGTVIILCKAGVHD
MGELHSMMLGKPTVLHSQFRLTYTMILNLLRVEALRVTDMMKRSFSENHRDTQAHEKRIS
ELRNTLSSLPPLDTEGQLSDLLSYYHTITELHITTQSLQQAVLESVNGLKALSVGRVVIV
NNSQHHNSLGVILQVSSDAVNRTFTALIICEKGNEEAASDEQSNKVALPIYSKTLFIPEG
PCSHTVQKLKLQDISAITTKALKVIPERIIDNYNKRLQPRFRLDPPGQAISTATQELLRL
AEANMGGMTVLDPVNDLHLKGVDVVEGVMRQRVLQDSLKDFHCIHSPTFSEQERMSVQEE
LDKLLFLVSDQSLTLLPEYHQRIKVLEALQYVDSSGAVQLKGRVACQISSHELLLTELLF
ENTLSPLAPEESAALLSCLVFTQNTQIEPHITNTLQEGINQVLAVAQRIGDLQRDCGIAQ
TAEDFVAQFKFGLTEVVYCWARGMPFAEIAQLTDVQEGTIVRCIQRLDEVLKEVRQAARI
VGDSVLGSKMERASLAIRRDIVFTASLYTH
NT seq
3693 nt
NT seq
+upstream
nt +downstream
nt
atggacaaaatagatttgcccccagtgggtcctgatgacttgcccctgtctctgctggag
atgggctgttctgggagatttgagctcatcacacacacactgcccaaaaacaaacccctg
cctccgcacagcactctcccacatggactgcctcctacttgtctggatttaaagacagag
gtagaaaagcgttttctgcgagatcctgcttggctcccggtacatgatgtagatgatgcc
ttcaacaagttccttaagataagtaagagagaaaaagaagtggactctctcctgcactgc
tctctgtctcaactgcattctggtctgtctgtggtcagagatccaaccaccggcatgctg
ctggatttcactgaggtgttgttagaggacacaggtttgtctgcaaaaaattcactctcg
ttacaaagacagcctggacctccgtcagagagtctgcgagggagcaacacaaactatcca
tttctgccagctggaatggaagaactgactttagagcagatcaaaaacaagtcagagctg
gaagaagacattgactttgagaaagatttgatgacagttcctcctgggctgaaggctggt
atggacttcagtgacaaagaagccagaaacacgaagagtgaggtgaacctgctgtcgctt
ctgtctacttttgatgatgtccttgatgctccgccagaggacaaagagggagtctcacaa
aaagaggagatcgttaaacttcccagaactaacagcctggaggatctgggcattaaagat
tcgggcagctcgcagcctcaagggaacacaggcagtctgactgaacaaaagaagaaaaac
ctggaagaagaaaagggagacaataaaaaatgggccattccggtggacatcagctcaccg
tgtgctgacttctacaaacggatccctgatccagcgtttaagtatccctttgagctggac
gtgtttcagaagcaggctattctccgtctggaagctcatgactctgtctttgttgcggct
cacacctcagccggcaagactgtggtggctgaatacgcaattgcactttcccagaaacac
atgaccaggaccatttacacctcccccattaaggccttgtccaatcagaagttccgagac
ttcaagaacacattcggtgatgtgggacttttgactggagacgtgcaactgaacccagaa
ggctcatgtctcattatgaccactgagattttgagatcgatgctctacaatggctcggag
gtcatcagagatctagaatgggtcatttttgatgaggttcactatatcaatgatgcagag
agaggagtggtgtgggaggaagtgcttatcatgttgccggagcatgttagcatcatcctg
ctcagtgccacagtgccaaacgcagtggagttcagtgaatggatcgggcgcatcaagaag
cgacatatttacgtgatcagcacaattaagaggcctgttcctctagagcactatctctac
acaggcaacagcaccaagactcagaaagagctcttcatgttgctggacgcaactggaaac
tttcttactaaaggctactacgctgcagtggaagccaagaaggagcgcactagtaaacat
gcacagtcttttggcacaaagaacgtatcgcagcacaacacaacagccagtcagaggcag
cagactccagtggtggcatttacattctctaggacacgatgtgatgaaaacgctcgctct
ttgacctctctggacctcaccacatccatagagaagagcgagatccactccttcctgcag
aagagcctgaccagactgagaggaggagatcgacagctaccacagatcctgctgatgcgt
gatttgttgaagagagggattggtgttcatcacagcggcatcctgccaatcctgaaggaa
gtcattgaaatgctcttctccagaggtttagtgaaggttctgtttgctacagagactttt
gccatgggtgtgaacatgcctgccagaactgttgtgtttgacagcatccgcaaacacgac
ggcacgggattcagaaatctgctgcccggcgagtacattcagatggcgggtcgtgccggc
agaagaggtttggatgccacaggaactgttatcatcctctgtaaagctggagttcatgat
atgggagaactccactcaatgatgctggggaagccgacggtgctgcactctcagttcaga
ctgacctacaccatgattctgaatctgctgcgtgtggaggccctgagggtcaccgacatg
atgaagagaagcttctctgaaaaccacagggatacacaggctcacgagaagagaataagt
gagctgagaaacacgctgtcttctcttcctccgctggacacggaggggcagttgtctgat
ttactgtcatattaccacacaatcacagagctgcacatcaccacacagagcctgcagcaa
gctgttctggagtcagtcaatggtctcaaagctctgtctgttggaagggtggtgatcgtg
aacaacagccagcatcacaactctctgggagtcattctacaggtgtccagcgatgcagta
aatcgcaccttcaccgctctcattatctgtgagaagggtaacgaggaggcggccagtgat
gagcaatctaataaagttgcacttcccatctatagcaaaacattgtttattcctgaggga
ccctgcagtcatactgtgcagaaactgaagttgcaggacatttctgctattacaaccaaa
gcactcaaggtcataccagagagaatcatcgacaactacaacaaaagactacagccacgc
ttcaggcttgatccaccaggtcaagctatctctacagcaacccaggagctccttcgattg
gctgaggcaaatatgggtggcatgaccgtccttgacccagtgaatgaccttcacctaaag
ggtgttgatgtggtggagggtgtgatgaggcagcgagtgttacaggactctctaaaagac
ttccactgtatccactcacccaccttctctgaacaggagaggatgagtgtacaggaagag
cttgataagcttctgttcctggtgtctgatcagtcattgacacttctgcctgagtaccat
cagagaatcaaggtgctggaagcgctgcagtatgtggacagcagtggtgcggttcagctg
aagggtcgtgtggcatgtcagatcagcagtcatgagctcttactgactgaactcctgttt
gagaacactttgagtcctctggcccctgaggagagcgccgccctgctgtcctgcctcgtc
ttcacacagaacacccagatagagccacatatcaccaacacactgcaggagggaatcaat
caagttctcgctgtagcccagcgtatcggtgacctgcagagggattgtgggattgctcag
accgctgaagacttcgtggcccagttcaagtttggcctgactgaggttgtgtactgctgg
gcaagaggaatgccatttgctgagatagcccagctgacagatgtgcaggagggaacaatc
gtgcgctgtatccagaggctggacgaggtcctgaaggaagtccgacaggctgctcgcatt
gtgggtgactctgtcctgggcagtaagatggaaagagcctctctggccatacgcagagac
attgtgttcaccgcctcgctctacacacactga
DBGET
integrated database retrieval system
