Danio rerio (zebrafish): 559665
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Entry
559665 CDS
T01004
Symbol
smc1a
Name
(RefSeq) structural maintenance of chromosomes protein 1A
KO
K06636
structural maintenance of chromosome 1
Organism
dre
Danio rerio (zebrafish)
Pathway
dre04110
Cell cycle
dre04114
Oocyte meiosis
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
559665 (smc1a)
04114 Oocyte meiosis
559665 (smc1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
dre03036
]
559665 (smc1a)
Chromosome and associated proteins [BR:
dre03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Cohesin complex
559665 (smc1a)
Meiosis-specific proteins
Cohesin complex and associated proteins
559665 (smc1a)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SMC_N
SMC_hinge
AAA_23
AAA_21
AAA_29
SlyX
HH_AprE
ABC_tran
Motif
Other DBs
NCBI-GeneID:
559665
NCBI-ProteinID:
NP_001155103
ZFIN:
ZDB-GENE-090506-9
Ensembl:
ENSDARG00000055754
UniProt:
E7F0X6
A0AC58IKA0
LinkDB
All DBs
Position
23:31627769..31653327
Genome browser
AA seq
1232 aa
AA seq
DB search
MGYLKLIEIENFKSYKGRQIIGPFHKFTAIIGPNGSGKSNLMDAISFVLAEKTSNLRVKT
LKDLIHGAPVGKPAANRAFVSMVYCEDNGEECTFTRAIIGSSSEYRINSKVVGLSDYSEE
LEKLGILIKARNFLVFQGAVESIAMKNPKERTALFEEISRSGELAQEYDRRKKEMVKAEE
DTQFSYHRKKNIAAERKEAKQEKEEAERYQRLKDEVVRAHVQLQLFKLYHNEEEIEKLNR
ELSQRNREIDKDRKKMDHVEEELKDKKKELGRMMRDQQNVEKEIKEKDAELNQKRPQYIK
AKENTAHKIKKLEVARKSLQNAQKMYKKRKADIEELDREQGAVEMSRQEFEERMEEEAQS
QGQDLTLEENQVKQYHRLKEEASKRAATLAQELEKFNRDQKADQDRLDLEERKKIETEAK
IKQKIREIEENQKRIEKLEDYIATSRQSLDEQRRMEEELTEEVELAKRRIDEINMELNQV
MEQLGDARIDRQENSRQQRKAEIMESIKRLYPGSVYGRLIDLCQPTQKKYQIAVTKVLGK
NMDAIIVDSEKTGRDCIQYIKEQRGEPETFLPLDYLEVKPTDEKLRELRGAKLVIDVIRY
EPPHIKKALQYACGNALVCENVEDARRIAFGGPYRHKTVALDGTLFQKSGVISGGASDLK
AKARRWDEKAVDKLKEKKEKLTEELKEQMKAKRKEAELRQVQSQAHGLQMRLKYSQSDLE
QTKTRHLSLNMQEKSKLESELANFGPRINDIKRIIQSRERDITQLRDRMNLVEDEVFFEF
CKEIGVRNIREFEEEKVKRQNEIAKKRLEFETQKTRLAIQLDYEKNQLKEDQEKVMMWEQ
TVKKDENEIERLKKEEHRHMKIIDETMAQLQDLKNQHLTKKGEVNDKNREMEEIRKKLGS
ANKELTQLQKEVTAIETKLEQKRSDRHNLLQACKMQDIKLPLKSGTMDDISQGEGGSQVE
DAISSPKASSSVHAKEALIEIDYSNLNEDLKDALSEDEIKGEMNTLQQRLNEQQSILQRI
SAPNMKAMEKLESVRDKFQETSDEFEAARKRAKKAKQAFEQIKKERFDRFNACFESVATN
IDEIYKALSRNSSAQAFLGPENPEEPYLDGINYNCVAPGKRFRPMDNLSGGEKTVAALAL
LFAIHSYKPAPFFVLDEIDAALDNTNIGKVANYIKDQSVQNFQAIVISLKEEFYTKADSL
IGVYPEQGDCVISKVLTFDLSQYPDANPNPND
NT seq
3699 nt
NT seq
+upstream
nt +downstream
nt
atgggatatttaaaactaatcgagatcgaaaatttcaaatcatataaaggacgccaaata
ataggaccgtttcacaagtttacagcaataattgggccaaatggatcagggaagtccaac
ctaatggacgccatcagttttgtattagctgaaaagaccagtaacttacgtgttaaaacc
ctgaaggatctcatccatggagcaccagtgggaaaaccagcagcaaaccgtgccttcgtg
agcatggtgtattgcgaggacaatggggaggaatgcactttcacacgggccatcattggt
tcttcatcagagtaccgaatcaacagtaaagtggtcgggctttcagattacagtgaggaa
ctggagaaactgggtatacttattaaggccagaaactttcttgtattccagggtgcagta
gagtctatagccatgaagaatcctaaagagaggacagctttgtttgaggaaatctcccgt
tctggtgaactggcccaggaatatgaccgcagaaagaaagagatggtgaaggcagaagag
gacacacagttcagctatcaccgtaagaagaacattgcagcagagcgcaaagaagccaag
caggaaaaagaggaggcggagaggtaccagagactgaaggatgaggttgtcagggctcat
gttcagctacagctctttaaactctaccataatgaggaggagatcgagaaactgaaccga
gagttgtctcaacgcaaccgtgagattgataaagacagaaagaagatggatcatgtggag
gaagagcttaaggacaagaagaaagagcttggaagaatgatgagagatcagcagaatgtg
gagaaggagataaaagagaaagatgctgagctgaaccagaaacggccacagtatatcaag
gccaaggagaacacagcccataaaattaagaagctggaggtggccagaaagtccttgcag
aatgcccagaagatgtacaagaagcgtaaggcggacatcgaggaactggaccgtgagcaa
ggggctgtggagatgtcaaggcaggagtttgaggagcggatggaagaagaggcacagagt
caaggccaagatctgacactggaggagaaccaggtaaaacagtatcacaggctgaaggag
gaggctagtaagcgggcagctactttggcacaggagctggagaagtttaacagggaccaa
aaggctgaccaggatagacttgatttggaggagaggaagaaaattgagactgaggccaaa
ataaagcagaagatccgagagattgaagaaaaccagaagcgtattgaaaagctggaggac
tatattgcaaccagcagacagtctctggatgaacagaggcgtatggaggaggaattgact
gaggaagtggagctggccaaaagaaggattgatgagataaacatggagttaaaccaagtg
atggagcaacttggagatgctcgcattgacaggcaggaaaacagccgtcagcagcgcaaa
gctgaaattatggagagcattaaacggctctaccctggctcagtgtatggcagactgatt
gacttatgccagccaacccagaagaaataccagattgctgtgaccaaagttttgggaaaa
aacatggatgccatcattgtggactctgagaaaaccggcagagattgcatccagtatatt
aaagagcaaagaggagaacctgagacctttctacccctggactatttggaggtgaaacct
acagatgagaaactgagagagcttcggggggcaaagctggtgattgacgtgatccgctac
gagcccccacacataaagaaagcccttcagtatgcctgtggcaatgctttagtgtgtgaa
aatgtggaggacgctcgtagaattgcctttggaggaccataccgccataagactgtggcc
ttggatggcactctcttccaaaagtcaggtgtgatctctggaggagctagtgacctaaaa
gccaaggctcggcgctgggatgagaaagctgtggacaaacttaaggaaaagaaagagaaa
ctgacagaagaattgaaggaacaaatgaaggcaaagaggaaggaggcagagctcagacag
gtccagtctcaggctcacggactgcagatgagactaaaatactctcagagtgatctggaa
cagacaaaaacccgccacctctctctgaacatgcaggagaaatcaaagttggagagcgag
ctggcaaattttggtccacgaatcaatgacatcaaacgaatcatccaatcacgagagagg
gacataacacagctaagagatcgtatgaacctggtagaggatgaggtcttttttgaattc
tgcaaagagatcggtgtgcgaaatatcagagagtttgaagaggaaaaagtgaagaggcaa
aacgagattgccaaaaaacggttagagtttgagacccaaaagacccgcctggccattcag
ttggattatgagaagaaccagttgaaggaggaccaggagaaagtcatgatgtgggagcag
actgtgaagaaggatgagaacgaaattgaaagacttaaaaaggaggaacacaggcacatg
aagatcattgatgagactatggctcagctacaggacctgaagaaccagcatctcactaag
aaaggagaagttaatgacaagaaccgagagatggaggagatccgcaagaaactgggctcg
gccaacaaagagctgacccagctgcagaaggaagtaaccgccattgagaccaaactggaa
cagaaacgcagtgaccgacacaacttactgcaagcctgcaagatgcaggacatcaaactg
cccctcaaatcagggacaatggatgacatcagccagggagagggaggctcacaagttgag
gatgcgattagcagcccaaaggcatcaagttcggttcatgccaaagaggcccttattgag
attgactacagcaacctgaatgaagacctcaaggatgctctgtcagaagacgaaatcaag
ggagagatgaacaccctccagcagaggctgaacgagcagcagagtatcctgcagagaatc
agcgctcccaacatgaaggccatggagaaactggagagcgtcagagacaagtttcaggag
accagtgatgagtttgaagctgcccggaaaagagcgaagaaagccaaacaagcatttgag
cagatcaaaaaagagaggtttgaccgattcaatgcctgttttgagtctgttgccacaaac
attgatgagatctacaaagcgctgtcacgtaacagcagtgcacaggcattccttggacca
gagaacccagaagaaccatatttagatggaatcaactacaactgtgtggccccaggaaag
aggttcaggcccatggataacctttcaggaggagagaagactgtagcagctttagctctc
ctttttgctattcacagctataagcctgcacctttctttgtcctggatgagattgatgct
gctttggataataccaacattggcaaggtggctaactacataaaggaccagtccgtccag
aatttccaggccattgttatctctctcaaagaggagttctacacaaaagctgactctctc
attggagtttaccctgagcaaggagattgtgtcatcagtaaggtgctgacctttgatctt
tctcagtatccagacgccaatcctaatcctaatgattag
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