Danio rerio (zebrafish): 559917
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Entry
559917 CDS
T01004
Symbol
msh4
Name
(RefSeq) MutS protein homolog 4 isoform X3
KO
K08740
DNA mismatch repair protein MSH4
Organism
dre
Danio rerio (zebrafish)
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
dre03036
]
559917 (msh4)
Chromosome and associated proteins [BR:
dre03036
]
Eukaryotic type
Meiosis-specific proteins
Others
559917 (msh4)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_II
MutS_IV
AAA_14
AAA_22
nSTAND_NTPase5
nSTAND3
AAA_21
AAA_29
TK
KTI12
ATPase_2
AAA_23
Motif
Other DBs
NCBI-GeneID:
559917
NCBI-ProteinID:
XP_009291531
ZFIN:
ZDB-GENE-131121-643
Ensembl:
ENSDARG00000075826
UniProt:
A0A8M3AK30
LinkDB
All DBs
Position
17:48874857..48906212
Genome browser
AA seq
880 aa
AA seq
DB search
MLHSSWEIIAVFFLNQRVTGRLSCICGICLSQGHLNISETAYRTNSSGGSSAHSWTSSTP
QLKTTPALSHHSRTPRRDLNMTTSSSASASHAARAPVIVAVVEGRGLARGEIGMASINMK
YPELVLSQFVDTGTYTKVITKLHNLTPMEILMPDTASVKGQGTKLYSLITETFPSVTFTA
VLRRYFNEKKGLEFIQQLCVPEFTTVLMEVQTKYYCLASASALLKYFEFVQKSIYAPKSL
KVTFSGSEQTAMIDAVSASNLELVVNHRNHRSEHTLFGVLNHTKTSGGERRLRSNILEPL
LEVDTIKSRQDTIQELLQNEELFFSLKNAIAHFLDIDELLSALVQIPKQETIAVAEAKIT
QVIQLKHIVELVPSLKVMLQHSTTHLLTAYCKSLEDCRFNSILDHIKSLINDDTSYMKGS
LTMRTQKCYAVRPNVSEFLDIARRAYTEVVDDIAGLVAQLGEKHNLPLRTSFSNARGFFI
QMKLEGGALPGGKLPDEFIKVSKQKNNFSFTTLDLMKMNDHCEEALKDIFHMSYVVVSKL
LNEVHEQIHCLYKLSDVVSMLDMLLSLANACTISNYVRPEFTDTLAIQQGRHPVLERISG
QQPISNNSYISEGSNFVIITGPNMSGKSTFLKQVALVQIMAQIGCFVPAEYASVRIADQI
FTRIGVDDDFETNSSTFMVEMKEVSYIIHNATNSSLIIIDELGRGTSPEEGIGICHSVCE
FLINLKAFTLFATHFLELCQLQTLYPNVENQHMQVQHIRTGDGRAERVVYTYQLSRGHSE
ERNYGIRAAEMTNLPLDIIQEAKTVADKINQKLWAKHHSDPATLKQRADYRLATRLVQTA
RNSQLDRASLRHYLKGLKTQYLAEIQMIKENATELVEIEE
NT seq
2643 nt
NT seq
+upstream
nt +downstream
nt
atgttacactccagttgggaaatcattgctgtattttttttaaatcaacgcgttacagga
cgtctttcatgcatatgcggaatatgcctgtcccagggtcacctgaacatcagtgaaaca
gcgtacaggaccaactcttctggaggatcatctgctcactcctggacctccagcactcca
cagctgaagaccacacctgcactgtcacaccacagccgaacccctcgcagagacctcaac
atgacaacatcttcatctgcatctgcatctcatgcggcgcgtgcgcctgtgatcgtggct
gtggtggagggacgaggtttagctcgaggggagattgggatggccagtattaacatgaaa
taccctgagctggtgctctcacagtttgtagacactggtacttatactaaggtaatcacc
aagctgcataacctgacgccgatggaaattctgatgccagacacggctagtgtaaaagga
cagggaaccaaactctacagtctcatcacagagaccttcccgtcggtcacatttactgcg
gtcttgaggaggtacttcaatgagaagaagggcctggagttcatacagcagctctgtgtg
cctgagttcaccactgtgctgatggaggtgcaaaccaaatactactgcctggcatctgca
tctgcccttctgaaatactttgagtttgtccaaaaatcaatatatgctccaaagtcattg
aaagtgacatttagtggcagtgagcagaccgccatgatcgatgcagtttcagccagcaac
ctggagctagtggtcaaccacagaaatcacagaagtgaacacactctatttggagtccta
aatcatactaaaacttctggtggtgagcggcggttgcgctctaatattctcgagcccctg
ctggaggtggacactataaagtcacgtcaggacactatacaggagcttttgcagaacgag
gagctcttcttcagtctgaagaatgccattgcacacttcctggatatagatgagctgctg
tctgctcttgttcagatcccaaagcaagagacgattgcagtggctgaagcaaaaataaca
caagttattcagctgaagcacatcgtggaactggtcccatcgctcaaggtgatgctgcaa
cattctacaacgcacttgctgacagcgtactgtaaatcacttgaagactgcaggtttaac
agcattctggatcatatcaaatctctgattaatgatgacaccagctacatgaaaggcagt
ttgaccatgcgcacgcagaagtgctacgctgtgcgacccaacgtcagtgaatttctggac
attgcacgaagagcttacaccgaggtggtagatgacattgcaggattagtggctcagctt
ggagagaagcacaaccttccgctccggacaagtttcagcaatgcacgtggcttttttatt
cagatgaagctggaggggggagccttgcctggtgggaaattaccagacgagttcatcaaa
gtttctaaacaaaagaacaacttcagcttcaccactttagacctcatgaaaatgaacgac
cactgtgaagaggccctaaaagacattttccacatgtcttatgtggtggtttccaagcta
ctgaatgaagtccatgaacaaatccactgcctgtacaaactgtctgatgttgtttcaatg
ctggacatgctgctctctttggctaatgcttgcaccatctcaaattacgtgcgtcctgaa
ttcacagatactttggcaatacagcagggtcgccaccccgtcctggagcgcatttctggg
caacagcccatctctaacaacagctacatctcagagggaagcaattttgtgatcataaca
ggcccaaacatgagtggcaagtccacttttttgaaacaggtggcccttgtccagataatg
gctcagataggatgttttgtgcctgcggagtacgcctctgttcgtattgcggatcagata
ttcacaagaataggagtggacgatgactttgagaccaactcctctacatttatggttgag
atgaaagaggtgtcttacatcatccacaatgcaaccaacagttctctgatcattattgat
gagctgggtcgaggcaccagtccagaggagggcattggcatctgccacagtgtctgtgaa
ttcctcattaatcttaaggccttcacactctttgccacacactttcttgagctgtgccag
ttgcaaactctttaccccaacgtggagaaccagcacatgcaggtgcagcacatccgcaca
ggagatggaagagctgagagggtcgtctacacctaccagctcagccgaggacattcagag
gagcgcaactacggcataagggcagcagagatgaccaatctaccactagacatcattcag
gaggctaaaactgttgcagataaaatcaaccaaaagctctgggctaagcatcatagtgat
cctgccactcttaaacagagagcagactatcgtctagccacccgactggtgcagaccgcc
cgtaactcacagctggaccgtgcgagcctacgtcactacttgaaaggactgaaaacacaa
tatctggctgagattcagatgataaaagaaaatgctacagagttggtagagattgaggag
tga
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